PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV55517.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 897aa MW: 100011 Da PI: 6.6956

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV55517.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	300.1	5.6e-92	150	493	1	349
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkfs 94 lv+lLl+cAea+ +d++la+++L+rl ++p gd++qR+ +yf+++L +rl+ ++++ + ++ + +e+ a++l+++++P++ f+ KZV55517.1 150 LVHLLLACAEALGCRDTRLANSILTRLWPCVNPWGDSLQRVSHYFAKGLDSRLSF--LQMVNPNVSFTSIVGElslitREEKCDAFSLLHQMTPYIGFG 246 68*************************************************97..33333222222222223445589999999********* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlel 191 +l+aN aI++a+ g + +Hi+D+++++ lQWp+L + LasR+ +gp +RiTg+ + + l + + L + A++lg+ +e+++l+++ + l+ KZV55517.1 247 FLAANDAIYQAAMGIDSLHIVDLGMEHNLQWPSLVRILASRSeGGPKFIRITGIIGDQ--DPMGLDKSMKGLCEEANSLGICLEYHLLAEQvSPLLLTR 343 **************************************556669**9955..999********************855545567799 PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 ++L+++ gEal Vn +++lh+ ++es + + ++L+ +k+l+P++++vveq+a+hn++ Fl rfle+l+yysa+fdslea+ pr+s +ri++E + + KZV55517.1 344 KSLELRGGEALFVNAIMHLHKHVKESRGSLK---TILQSIKKLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEATHPRNSPQRIVIESFHF 439 ******************987776666...9************************************************************ PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 ++ei+n+vaceg++r erhe++ +Wr++l++aGF+ v l+ ++a+ ++++++ y KZV55517.1 440 AEEIRNIVACEGSNRMERHERADQWRRQLGRAGFQVVGLKC--LNKAQEMVSNYG---Y 493 ***********************************9975..444444554444...3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.965	124	503	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-89	150	493	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence Send to blast
MMDGWNSFPT LGYLNHDSAI RRFCPARVEE EQGEEWGGIP PDEEMDMWPC CMDGTLELPP 60 TEAEEIVDTF FNVECFEREN ANKSSDEENG YSGLFQEENP LQFNILDDFC YEPDIPLMVE 120 EDETKEFGLF VPGESAGYEM TNGVDQGLQL VHLLLACAEA LGCRDTRLAN SILTRLWPCV 180 NPWGDSLQRV SHYFAKGLDS RLSFLQMVNP NVSFTSIVGE LSLITREEKC DAFSLLHQMT 240 PYIGFGFLAA NDAIYQAAMG IDSLHIVDLG MEHNLQWPSL VRILASRSEG GPKFIRITGI 300 IGDQDPMGLD KSMKGLCEEA NSLGICLEYH LLAEQVSPLL LTRKSLELRG GEALFVNAIM 360 HLHKHVKESR GSLKTILQSI KKLNPTLLTV VEQDANHNGP FFLGRFLESL HYYSAIFDSL 420 EATHPRNSPQ RIVIESFHFA EEIRNIVACE GSNRMERHER ADQWRRQLGR AGFQVVGLKC 480 LNKAQEMVSN YGYRVKYSSY RVKNFRSEGI RFDSEATVTD SVILIQKGVY RIVTLLASRR 540 LAPTSFTRKP ALQTVGGGRS SIRSTTGNTI PRGGAADSML WRLGTCVTLN GSGIQLVVGP 600 QQLWLRNHNF GLAQRIMVKR LATSPHDLLG ITDSACKNQL VMVSVQYGPF NTYIPIRSTI 660 IGKSRVAKDP IAMNTSWRSN SDIASVTSIG YPRMKASGES STTKHQLLHA SGPHPIPPPN 720 DPNTCVTLNG SGIQLAVDPQ PLWLRNHNFG LAQRIMVKRL ATSPHDPLDS IGYPRMKASG 780 ESSTTKHQLL HASGPHPIPP PNDPKVSMTF RVVRTNRYNQ DLGLFHSTNG NHLESPNEGS 840 SIDHQVTIHL HAQNITMFPT NETWYFASQM LVSSSGGLIL ILTAQSTRNV FRIHSDY

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence Send to blast

MMDGWNSFPT LGYLNHDSAI RRFCPARVEE EQGEEWGGIP PDEEMDMWPC CMDGTLELPP  60
TEAEEIVDTF FNVECFEREN ANKSSDEENG YSGLFQEENP LQFNILDDFC YEPDIPLMVE  120
EDETKEFGLF VPGESAGYEM TNGVDQGLQL VHLLLACAEA LGCRDTRLAN SILTRLWPCV  180
NPWGDSLQRV SHYFAKGLDS RLSFLQMVNP NVSFTSIVGE LSLITREEKC DAFSLLHQMT  240
PYIGFGFLAA NDAIYQAAMG IDSLHIVDLG MEHNLQWPSL VRILASRSEG GPKFIRITGI  300
IGDQDPMGLD KSMKGLCEEA NSLGICLEYH LLAEQVSPLL LTRKSLELRG GEALFVNAIM  360
HLHKHVKESR GSLKTILQSI KKLNPTLLTV VEQDANHNGP FFLGRFLESL HYYSAIFDSL  420
EATHPRNSPQ RIVIESFHFA EEIRNIVACE GSNRMERHER ADQWRRQLGR AGFQVVGLKC  480
LNKAQEMVSN YGYRVKYSSY RVKNFRSEGI RFDSEATVTD SVILIQKGVY RIVTLLASRR  540
LAPTSFTRKP ALQTVGGGRS SIRSTTGNTI PRGGAADSML WRLGTCVTLN GSGIQLVVGP  600
QQLWLRNHNF GLAQRIMVKR LATSPHDLLG ITDSACKNQL VMVSVQYGPF NTYIPIRSTI  660
IGKSRVAKDP IAMNTSWRSN SDIASVTSIG YPRMKASGES STTKHQLLHA SGPHPIPPPN  720
DPNTCVTLNG SGIQLAVDPQ PLWLRNHNFG LAQRIMVKRL ATSPHDPLDS IGYPRMKASG  780
ESSTTKHQLL HASGPHPIPP PNDPKVSMTF RVVRTNRYNQ DLGLFHSTNG NHLESPNEGS  840
SIDHQVTIHL HAQNITMFPT NETWYFASQM LVSSSGGLIL ILTAQSTRNV FRIHSDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-46	157	478	26	334	Protein SCARECROW
5b3h_A	1e-46	157	478	25	333	Protein SCARECROW
5b3h_D	1e-46	157	478	25	333	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV55517.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086339.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A2Z7DEK6	0.0	A0A2Z7DEK6_9LAMI; GRAS family transcription factor
STRING	EOY14154	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14067	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-57	RGA-like 2