PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55527.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24711.9 Da    PI: 4.7953
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55527.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.62.1e-151457649
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + n  vtfskRr+g++ KA EL  LC+ ++a+++ s+++k++ +
  KZV55527.1 14 QKNLRVTFSKRRKGLFGKAGELAALCGSQIAILVQSPSNKIFAF 57
                67889***********************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-21174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.063161IPR002100Transcription factor, MADS-box
SMARTSM004329.6E-23160IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-14323IPR002100Transcription factor, MADS-box
PfamPF003197.9E-171457IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRRRIEMKK IGIQKNLRVT FSKRRKGLFG KAGELAALCG SQIAILVQSP SNKIFAFGNP  60
SFESVIRKYE SAGTCNNSSP LEGDLTEVKK AGYFEAVARL EGQKRMGDSG KFWWDEEIEG  120
MKLHELEEYV EELEKLRERL KIKEMEVGKE SQRPWPLESD STGVPYQNMG LDLDVFQDQI  180
DYFMKTSEES DVQEEEIVRH DWHFDDDLWG WSTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55527.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085622.12e-39agamous-like MADS-box protein AGL62
TrEMBLA0A2Z7DEL41e-156A0A2Z7DEL4_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-22AGAMOUS-like 61