PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55589.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 240aa    MW: 27879.7 Da    PI: 9.7592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55589.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-091259347
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE +l+ +a +++  +    +W ++a++++ g++  ++ ++++ +
       KZV55589.1 12 PWTKEENKLFERALAMYDEKrtpnRWFKVAAMIP-GKSVCDVMNHYREL 59
                     8*********************************.***********975 PP
2Myb_DNA-binding25.33.5e-081361721147
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++ + +++G+g+W++I+r +   +t+ q+ s+ qky
       KZV55589.1 136 RFLAGLQKHGKGDWRSISRNFVISKTPTQVASHAQKY 172
                      8*********************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.3E-9962IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-61160IPR009057Homeodomain-like
SuperFamilySSF466891.05E-111167IPR009057Homeodomain-like
PROSITE profilePS500906.7711260IPR017877Myb-like domain
CDDcd001671.61E-81260No hitNo description
PfamPF002491.2E-81259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-7105180IPR009057Homeodomain-like
PROSITE profilePS5129411.84105177IPR017930Myb domain
SuperFamilySSF466894.55E-10107176IPR009057Homeodomain-like
SMARTSM007170.028109175IPR001005SANT/Myb domain
CDDcd001672.91E-5112172No hitNo description
TIGRFAMsTIGR015573.3E-11135176IPR006447Myb domain, plants
PfamPF002493.7E-6136172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
METIFHPAPY TPWTKEENKL FERALAMYDE KRTPNRWFKV AAMIPGKSVC DVMNHYRELV  60
EDVSNIEAGL VPIPGYLSSS FTLELEDGRG FDHVMCRKRG RTSVQERRKG VPWTEDEHRS  120
CRDIEEYPER HFGNRRFLAG LQKHGKGDWR SISRNFVISK TPTQVASHAQ KYYLRQVSRG  180
KDKRRPSIHD MTIVDLSNAS SECYKIPRPA KSYGFKPMQK PTIFDDGGGS WFWTPLLAIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1712891086RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027161056.11e-90transcription factor DIVARICATA-like
RefseqXP_027161057.11e-90transcription factor DIVARICATA-like
SwissprotQ8S9H75e-69DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2Z7D7R90.0A0A2Z7D7R9_9LAMI; Duplicated homeodomain-like superfamily protein
STRINGMigut.F00707.1.p4e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-75MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]