PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55853.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 678aa    MW: 75406.7 Da    PI: 6.4673
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55853.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.34.9e-1232906621374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+lL++c+e + s++ ++++++Larl elasp g +p++Rlaayfte+La r+ar +++++++    +e ++ +  +  +al+l+++vsPi+kf h+t
  KZV55853.1 290 LVSLLIACVEQIGSRNVAAINRCLARLGELASPIGgSPVHRLAAYFTEGLALRVARLWPQTFHIAtFLREFDRVDDNSGGNALRLLNHVSPIPKFIHFT 388
                 689******************************9989*************************9994556777777888899****************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  N+ +l+ +eg+++vHiiDfdi+qGlQWp L+q+LasR+++p ++RiTg+g+    sk+el etg+rLa fA++l++pfef++ v++rled++l++L+v
  KZV55853.1 389 SNEILLRTFEGKDKVHIIDFDIKQGLQWPGLFQSLASRADPPSHIRITGIGE----SKQELIETGDRLAGFAAALDLPFEFHP-VVDRLEDVRLWMLHV 482
                 ****************************************************....***************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 k++E++aVn+ +q h++l +++  +   +++L+l++s++++ ++++eqe  hn+ ++  r++++l+yysa+fds++++lp +s  rik+E++ +g ei+
  KZV55853.1 483 KERESVAVNCLFQFHKVLYDNTGGT--LRDFLDLIRSTKAEAIIMAEQEGAHNELNLDSRLSNSLKYYSAIFDSIDSSLPLDSPMRIKIEEM-FGSEIK 578
                 *****************96655544..489**************************************************************.****** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374
                 n+vaceg++r+erhet++kW++ +e+ GF+ +++se++  q ++ll++++++ y+v ++       +l+l W d+pL+svSaW+
  KZV55853.1 579 NIVACEGRDRFERHETFGKWHQLMEHGGFQCMEMSEREILQSQMLLKMYSNKNYKVGKNgrdgaATCLTLSWLDQPLYSVSAWK 662
                 **************************************************999****887777789999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.436264637IPR005202Transcription factor GRAS
PfamPF035141.7E-120290662IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MLAGCSPTLL SPRHRLRSEA STQFQVCHFP TMSTQRLDLP CTFVRKEASR SQPIRPVGLS  60
IEAPIEAKTT GCSLRQGIKL PPAATTESRR EKKVEFWEKG KVLKTKKRYA EELSYDEESF  120
ISPMKRKRGN GKSDVMPEEQ GNLSSLSQLG GESFWFQPGF NVPQSIPSSA GLDTPLVSFP  180
ISCSREEERV CFVPSDISVP PLPPLSNIPW FDSVVITDLG DKNVEARCGP EKEMSGSSST  240
SSDSHGLVLR LSGNPEREIG NGSSPPNPRE SAEAIVSGNN GHQERECVEL VSLLIACVEQ  300
IGSRNVAAIN RCLARLGELA SPIGGSPVHR LAAYFTEGLA LRVARLWPQT FHIATFLREF  360
DRVDDNSGGN ALRLLNHVSP IPKFIHFTSN EILLRTFEGK DKVHIIDFDI KQGLQWPGLF  420
QSLASRADPP SHIRITGIGE SKQELIETGD RLAGFAAALD LPFEFHPVVD RLEDVRLWML  480
HVKERESVAV NCLFQFHKVL YDNTGGTLRD FLDLIRSTKA EAIIMAEQEG AHNELNLDSR  540
LSNSLKYYSA IFDSIDSSLP LDSPMRIKIE EMFGSEIKNI VACEGRDRFE RHETFGKWHQ  600
LMEHGGFQCM EMSEREILQS QMLLKMYSNK NYKVGKNGRD GAATCLTLSW LDQPLYSVSA  660
WKAAADLVGS STSFPQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6029766126378Protein SCARECROW
5b3h_A9e-6129766125377Protein SCARECROW
5b3h_D9e-6129766125377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105127KKRYAEELSYDEESFISPMKRKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55853.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072178.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2Z7D9U70.0A0A2Z7D9U7_9LAMI; Scarecrow-like protein 28
STRINGPGSC0003DMT4000078790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein