PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55864.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 283aa    MW: 32196.4 Da    PI: 6.7551
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55864.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78e-082322652154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp+++++++L +++gL+ +q+ +WF N+R +
  KZV55864.1 232 KWPYPTEDDKAKLVEQTGLQLKQINNWFINQRKR 265
                 469*****************************87 PP
2ELK24.37.3e-09186207122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK +L++++++++ ++++E++
  KZV55864.1 186 ELKIELKQGFKSKIEDVREEIL 207
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.1E-192064IPR005540KNOX1
PfamPF037901.4E-172263IPR005540KNOX1
SMARTSM012561.2E-2475130IPR005541KNOX2
PfamPF037915.3E-1878129IPR005541KNOX2
PROSITE profilePS512139.045186206IPR005539ELK domain
PROSITE profilePS5007111.693206269IPR001356Homeobox domain
SMARTSM003892.6E-10208273IPR001356Homeobox domain
SuperFamilySSF466893.29E-16208271IPR009057Homeodomain-like
CDDcd000861.78E-11209269No hitNo description
Gene3DG3DSA:1.10.10.607.9E-25213269IPR009057Homeodomain-like
PfamPF059201.2E-17226265IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMGSGGFSDG TMAVSVEHHH QLKAEIATHP LYEQLLAAHV SCLRVATPID QLPLIDAQLS  60
QSHHILQAYA QNNNHSLSPH ERQELDNFLA QYLLVLCSFR EQLQQHVRVH AVEAVMACRE  120
IEQNLLSITG ATLGEGTGAT MSDDEDEVQM DFSLDQSMAD GHDLMGFGPL LPTESERSLM  180
ERVRQELKIE LKQGFKSKIE DVREEILRKR RAGKLPGDTT TTLKNWWQQH AKWPYPTEDD  240
KAKLVEQTGL QLKQINNWFI NQRKRNWHSG SQSATSLKSK RKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13209274873Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262282RKRNWHSGSQSATSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55864.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072032.10.0homeobox protein HD1
SwissprotQ9FPQ81e-165KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A2Z7DEN30.0A0A2Z7DEN3_9LAMI; Uncharacterized protein
STRINGGorai.003G163800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-157KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]