PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55882.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27419.1 Da    PI: 4.3086
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55882.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.5e-213083356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k++++t+eq++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  KZV55882.1 30 KKRRLTPEQVHSLEKSFEIENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 83
                5678*************************************************9 PP
2HD-ZIP_I/II135.71.5e-4329119191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv++LE+sFe e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l+++ e+++ke+++L++e+
   KZV55882.1  29 EKKRRLTPEQVHSLEKSFEIENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLVSDYESISKENDKLKAEV 119
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.5722585IPR001356Homeobox domain
SMARTSM003893.1E-202889IPR001356Homeobox domain
SuperFamilySSF466896.42E-203096IPR009057Homeodomain-like
PfamPF000463.4E-183083IPR001356Homeobox domain
CDDcd000863.24E-193086No hitNo description
Gene3DG3DSA:1.10.10.604.5E-223192IPR009057Homeodomain-like
PRINTSPR000313.2E-65665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000313.2E-66581IPR000047Helix-turn-helix motif
PfamPF021835.8E-1785126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEEISRRRPF FSTAEELYEE EYYDELLPEK KRRLTPEQVH SLEKSFEIEN KLEPERKTQL  60
AKKLGLQPRQ VAVWFQNRRA RWKTKQLERD YDQLKSSYDS LVSDYESISK ENDKLKAEVL  120
SLMEKMNAEE HPAGESQAQH ASNPVPTDTP PCLQLTMKVE DRQSIGSDGS AVVDDDGPQL  180
LDSGDSYFPS SHYPDCVVAV DEDDGSDNGG SYFEYVLPVT EQQHHDDDGE PIGWFIWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17785RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849408.11e-107PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022832e-81HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2Z7DES91e-176A0A2Z7DES9_9LAMI; Uncharacterized protein
STRINGMigut.H00128.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-71homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]