PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56019.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21872.8 Da    PI: 10.3164
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56019.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-312574150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  KZV56019.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                79***********************************************8 PP
2K-box113.91.5e-3792187398
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 +s++ s++ea+++++qqe++kL+++i+nLq+ +R+++Ge+L+ L+l+eL++Le+++e+++++iRskKnell+++ie++qk+e +l+++n++Lr+k+
  KZV56019.1  92 SSNNGSVAEANTQYYQQEASKLRAQISNLQNHNRNMIGESLGGLTLRELKNLETKVERGISRIRSKKNELLFAEIEYMQKREIDLHHNNQYLRAKV 187
                 3444449**************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-401776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.0951777IPR002100Transcription factor, MADS-box
CDDcd002651.01E-431894No hitNo description
PRINTSPR004043.3E-331939IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-331991IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003197.6E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-335475IPR002100Transcription factor, MADS-box
PfamPF014866.0E-27101187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.431103188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEFHNEQARD LSPQRKIARG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSVKT TIERYKKASS DSSNNGSVAE ANTQYYQQEA SKLRAQISNL  120
QNHNRNMIGE SLGGLTLREL KNLETKVERG ISRIRSKKNE LLFAEIEYMQ KREIDLHHNN  180
QYLRAKVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-2017101187MEF2C
5f28_B3e-2017101187MEF2C
5f28_C3e-2017101187MEF2C
5f28_D3e-2017101187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56019.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102155.11e-121floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ435851e-115AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLA0A2Z7D8Y71e-134A0A2Z7D8Y7_9LAMI; MADS-box transcription factor AGAMOUS
STRINGMigut.M00986.1.p1e-116(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]