PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV56345.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NF-YB

Protein Properties

Length: 202aa MW: 22756.8 Da PI: 5.0751

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV56345.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	118.5	3.1e-37	38	129	2	93
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 r+ d++lPi nv++im++vlP + kis+d+ket+qecvsef++f t a++ c+re r+ i+++d+l al + Gf+dy+epl+v+lkkyr KZV56345.1 38 RNPDEYLPIPNVIKIMRQVLPPHVKISDDSKETIQECVSEFVAFFTRTANEICHRECRRIIKPEDVLSALQSKGFDDYIEPLTVFLKKYRTR 129 6789**************************************************************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.0E-36	35	133	IPR009072	Histone-fold
SuperFamily	SSF47113	6.93E-29	41	129	IPR009072	Histone-fold
Pfam	PF00808	3.7E-20	44	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.4E-9	71	89	No hit	No description
PRINTS	PR00615	7.4E-9	90	108	No hit	No description
PRINTS	PR00615	7.4E-9	109	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MTFWAIPEMM MITQEANSEA THIAIDTSHM TCNHQFKRNP DEYLPIPNVI KIMRQVLPPH 60 VKISDDSKET IQECVSEFVA FFTRTANEIC HRECRRIIKP EDVLSALQSK GFDDYIEPLT 120 VFLKKYRTRG GSNHVPQAVP EAMDQPVLQP QVIQSTASFG STSTLYQADA DELSKILDYL 180 IGDRSARGEG SCGSSLFEPC NN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-38	28	127	2	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV56345.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095575.1	1e-41	nuclear transcription factor Y subunit B-6-like
STRING	Gorai.009G184800.1	2e-38	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	3e-38	nuclear factor Y, subunit B6