PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV56448.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 161aa MW: 17883.2 Da PI: 7.8143

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV56448.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.9	1.1e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C +dCv+apyfpa++p+kfa vh++FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++la +++ KZV56448.1 13 PCAACKLLRRRCGQDCVFAPYFPADEPHKFASVHRVFGASNVNKMLQDLPEHQRADAVSSMVYEANARIRDPVYGCVGAISSLQQQIDSLQTQLAFAQA 111 7**********************************************************************************************9987 PP DUF260 100 e 100 e KZV56448.1 112 E 112 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.738	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MKDSSRKQGA ACPCAACKLL RRRCGQDCVF APYFPADEPH KFASVHRVFG ASNVNKMLQD 60 LPEHQRADAV SSMVYEANAR IRDPVYGCVG AISSLQQQID SLQTQLAFAQ AEVVHMRMRQ 120 LSSPENASPS SGNTQSRRAT RSLFNMDMVV DQTDMDDSIW P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	9	129	7	127	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	9	129	7	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV56448.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090495.1	3e-96	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	4e-68	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2Z7DGK1	1e-117	A0A2Z7DGK1_9LAMI; LOB domain-containing protein 4-like
STRING	PGSC0003DMT400022286	5e-93	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-62	LOB domain-containing protein 4