PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV56516.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 205aa MW: 23231.3 Da PI: 5.7956

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV56516.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.6	6.6e-36	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C+++Cvlap fpa+q+k f+nvh+lFG++n++++l++l+++++ +am+s+ ++A +r + PvyG++ i++l+ q++ +++el+++ + KZV56516.1 10 ACAACKYQRRRCTSECVLAPFFPADQMKMFQNVHRLFGVKNIVNTLRELDPDQKAIAMKSMKFQATMRDKYPVYGCLVEIQQLSYQIQLAEEELQAVLQ 108 7*********************************************************************************************99877 PP DUF260 100 e 100 + KZV56516.1 109 Q 109 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.971	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-35	10	106	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MTLKSGSGQA CAACKYQRRR CTSECVLAPF FPADQMKMFQ NVHRLFGVKN IVNTLRELDP 60 DQKAIAMKSM KFQATMRDKY PVYGCLVEIQ QLSYQIQLAE EELQAVLQQL AYYRQSQQQE 120 MSPTNDYLSQ LQLAVAPPPA GIPAMPVLRQ ENVPPDYGPV RAALPVASYS NAEYLDSREN 180 NGLWVQQQYG NVENENADQW SCNHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-27	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-27	6	113	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV56516.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071735.1	1e-86	LOB domain-containing protein 27
Swissprot	Q9STS6	1e-43	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A2Z7DCG7	1e-151	A0A2Z7DCG7_9LAMI; LOB domain-containing protein 27-like
STRING	Migut.D01865.1.p	3e-71	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-43	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]