PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56914.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 188aa    MW: 21631 Da    PI: 4.5301
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56914.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.11.7e-36111291128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrF Ptdeelvv++L++k++  + +  ++i+++d+y ++PwdL+ k+ +e ++wyf+s+r +         rat sgyW++ g +++++++ g++
  KZV56914.1  11 LPPGFRFYPTDEELVVHFLQRKAALLPYDP-DIIPDLDLYPYDPWDLNGKAMGEGNKWYFYSRRTQ--------VRATGSGYWQSLGVEEPIYTSAGSK 100
                 79*************************999.99**************977778899******9865........699********************** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kk  +f+ g+  +g+kt+W+m+eyrl
  KZV56914.1 101 VGIKKYCAFHIGEPAQGVKTNWIMEEYRL 129
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-477158IPR003441NAC domain
PROSITE profilePS5100544.82111160IPR003441NAC domain
PfamPF023655.5E-2212129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGDYSSFNSN LPPGFRFYPT DEELVVHFLQ RKAALLPYDP DIIPDLDLYP YDPWDLNGKA  60
MGEGNKWYFY SRRTQVRATG SGYWQSLGVE EPIYTSAGSK VGIKKYCAFH IGEPAQGVKT  120
NWIMEEYRLS DHASTHRASR SRRSSRIDYS KWVVCRVYEN DDDDGTELSC LDEVFLSLDD  180
LDEISLPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-401016119169NAC domain-containing protein 19
3swm_B1e-401016119169NAC domain-containing protein 19
3swm_C1e-401016119169NAC domain-containing protein 19
3swm_D1e-401016119169NAC domain-containing protein 19
3swp_A1e-401016119169NAC domain-containing protein 19
3swp_B1e-401016119169NAC domain-containing protein 19
3swp_C1e-401016119169NAC domain-containing protein 19
3swp_D1e-401016119169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092697.12e-96NAC domain-containing protein 104 isoform X1
RefseqXP_020553092.12e-96NAC domain-containing protein 104 isoform X1
RefseqXP_020553093.12e-96NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK61e-79NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2Z7DC941e-138A0A2Z7DC94_9LAMI; Uncharacterized protein
STRINGXP_009762857.19e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-63xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]