PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56929.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 281aa    MW: 32154 Da    PI: 8.2575
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56929.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42e-12142167126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF+H+
  KZV56929.1 142 YQPDICKDYKETGYCGYGDSCKFMHD 167
                 67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9140172IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878141169IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-12142172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.2E-13211262IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139204.8E-9220263No hitNo description
SuperFamilySSF578501.55E-13220263No hitNo description
CDDcd001628.24E-9221262No hitNo description
SMARTSM001841.7E-4221258IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.571221259IPR001841Zinc finger, RING-type
PROSITE patternPS005180236245IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFNKKKQIVA DNKLHFSSGP RKRSLTSDDE VKKTKATVFE FESSNEIQIH NDSRATSTLE  60
TETEFSRDAR AIRERVLKQA ADALKGNNKS ASGEKLYKGI HGYTDYKAGF RREQTVASEK  120
AGGSHGPLRA SAHIRVSARF DYQPDICKDY KETGYCGYGD SCKFMHDRGD YKSGWQLEKE  180
WDEKEKARAK KLTMGLKDDD DDERGPEISD EDDEDSLPFA CFICREPFVD PVMTKCKHYF  240
CEHCALKHHA RNKKCFVCNQ PTNGIFNTAF EIRKRMAADK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-6352276113317RING finger protein 113A
5z58_M4e-6352276113317RING finger protein 113A
6ff4_t4e-6352276113317RING finger protein 113A
6ff7_t4e-6352276113317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022898398.11e-165zinc finger CCCH domain-containing protein 1
RefseqXP_022898399.11e-165zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-144C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2Z7DAQ30.0A0A2Z7DAQ3_9LAMI; Zinc finger CCCH domain-containing protein 1
STRINGMigut.B01852.1.p1e-159(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-146C3H family protein