PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56931.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 247aa    MW: 28363 Da    PI: 9.505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56931.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.63e-29109169158
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                 ldDgy WrKYGqK++ gs++pr+YYrCt++   gC v+k+v+r+++dp+++e+tY+g+H++
  KZV56931.1 109 LDDGYYWRKYGQKDILGSKHPRAYYRCTHRgtqGCLVTKQVQRTDKDPSLFEVTYKGKHTC 169
                 59***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-29101169IPR003657WRKY domain
PROSITE profilePS5081123.973104167IPR003657WRKY domain
SuperFamilySSF1182906.41E-26108169IPR003657WRKY domain
SMARTSM007744.3E-39109171IPR003657WRKY domain
PfamPF031062.4E-26110169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MENFGTINRD SLILELTQGR TYANQLREEL RPTLASCVNL LERVLSSYDN AFALLNCMTL  60
LRNGDPKTEG SEPESKAQVP SRNPKKRKTM ATWSQQLRVC SETAFEGQLD DGYYWRKYGQ  120
KDILGSKHPR AYYRCTHRGT QGCLVTKQVQ RTDKDPSLFE VTYKGKHTCI QEMRKKKKEN  180
LDTKKRREGE EASERHSGQR NLTSKPGNQE MPIKDLSLPT FTSSPTQIGF EQNVEDSIFR  240
SLKTSLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-22109169868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093555.13e-80probable WRKY transcription factor 41
SwissprotQ8H0Y83e-37WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A2Z7DAY20.0A0A2Z7DAY2_9LAMI; Putative WRKY transcription factor 46
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-39WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]