PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57106.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26722 Da    PI: 8.3217
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57106.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.12.7e-241056248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                rien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifs +gkly 
  KZV57106.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYQ 56
                8********************************************96 PP
2K-box25.74.7e-10871481373
       K-box  13 kaeslqqelakLkkeienLqreqR.hllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                 +    ++e++ Lk+eie Lq+ +     G + + +sl eL+ Le++Le  + +iRs+K +++
  KZV57106.1  87 HLMDPNKEISMLKQEIEVLQKGLSlISSGGGGGAMSLDELNALEKHLEIWIYHIRSTKCHVV 148
                 5556689*************765414579999**************************9986 PP
3K-box233.3e-0916119962100
       K-box  62 lkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + +iRs+K+++++++i+ l++ke  lq +n+ L+ k++e
  KZV57106.1 161 IYHIRSTKMNIMFQEIQLLKNKEGILQAANMHLQDKIDE 199
                 689*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.03E-27176IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.889161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-34160IPR002100Transcription factor, MADS-box
CDDcd002659.08E-37274No hitNo description
PRINTSPR004049.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.49888203IPR002487Transcription factor, K-box
PfamPF014861.2E-892148IPR002487Transcription factor, K-box
PfamPF014861.1E-6161197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MARGKIQLRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSA HGKLYQQATK  60
GTMQDLIARY IKYNPEATAE DPKLDNHLMD PNKEISMLKQ EIEVLQKGLS LISSGGGGGA  120
MSLDELNALE KHLEIWIYHI RSTKCHVVVG GMRLGNELCR IYHIRSTKMN IMFQEIQLLK  180
NKEGILQAAN MHLQDKIDEQ FEMAANMASM SKDDLEYPLT TNILGTHNDY GIYQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-17174173MEF2C
5f28_B3e-17174173MEF2C
5f28_C3e-17174173MEF2C
5f28_D3e-17174173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57106.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095942.11e-89agamous-like MADS-box protein AGL12 isoform X1
SwissprotA2YQK91e-65MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-65MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A2Z7DE531e-175A0A2Z7DE53_9LAMI; Uncharacterized protein
STRINGSolyc11g032100.1.16e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-52AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]