PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57530.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 325aa    MW: 35770.1 Da    PI: 5.1723
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57530.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.7e-18246279134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C++C + kTp+WR gp g+ktLCnaCG+++++ +
  KZV57530.1 246 CTHCLVQKTPQWRAGPLGPKTLCNACGVRFKSGR 279
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.4E-794324IPR016679Transcription factor, GATA, plant
SMARTSM004014.8E-14240294IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.741240276IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-13243303No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13243277IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.64E-13245302No hitNo description
PfamPF003206.8E-16246279IPR000679Zinc finger, GATA-type
PROSITE patternPS003440246271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MECIEERALK SSFLSQTGVK TGSNDDVWCL AALNSVPSDD FPVEDLLNLD FSEKELQEGC  60
FFVEDEEEKA SKETNSNDFS SIFSGADEFD SFSAGELAVP VEDLENLEWL SQFVDDSEPG  120
LSLVWPAGSF MAKTEASSGG NRVDKLSKPV QKTRSTLCFP TEVSRKPRSK RSKENGRPWP  180
LSSPALSSDE SSSVSSCSSG SITIPPFVFT SPVQDMELFT SVEKPPAKKH KIKQEAAGGF  240
VSGRRCTHCL VQKTPQWRAG PLGPKTLCNA CGVRFKSGRL FPEYRPACSP TFSQEIHSNS  300
HRKVLEMRRR KEVHGAAEQD LLANV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088480.21e-138GATA transcription factor 5-like
RefseqXP_020551667.11e-138GATA transcription factor 5-like
TrEMBLA0A2Z7DD100.0A0A2Z7DD10_9LAMI; GATA transcription factor
STRINGMigut.N01274.1.p1e-120(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-57GATA transcription factor 5