PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV57568.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C3H

Protein Properties

Length: 695aa MW: 77346.9 Da PI: 4.7923

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV57568.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	8.1e-07	238	257	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C f+a+ G+C +G +C+F H KZV57568.1 238 VCEFHAK-GWCIRGKSCRFLH 257 5999999.************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.173	233	260	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-5	233	257	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.7E-5	238	257	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MPSSSAAVPP YPSQPSPAGG QEGEDEIEYE SEYEEIEEEI EVEEDVEVEE EVEEQVAEGK 60 RKAGDDSEIG EDLTPVRKEN NLIDNDEDMD LEQDEERLNP DPLAMRMSVV NPQVDINTNE 120 VFCGGFLSSE RIEGGKKEDL CTNEKKTFRD TDSRASLDGN FEVKVKNNGH NATLTITDAC 180 SQEDSGDGFA VPKPLQTAVE AVKVMEEIPL RMSGALVTSR DSSYGDGFDV GNKRPRIVCE 240 FHAKGWCIRG KSCRFLHIKE GSDASVQQKS EFIQYCHGKY LVFDFHQTGL LAVTATSSVD 300 MLPPESRNNP VNLQIQQSVG HKHNMFDGAR EKAGKIPVGQ NSCLDDFNRY TCPPVKCQSF 360 ETNRELQGNF YGASCDTYKS RIFSSGTKET VGKRNELMPD AHRLNLSFHS RPPVPFASSS 420 WMTNALVTWN SLESNQEYRA SISSSFRKSP TPLSGSNSGC LSGSNNLTNT QPTKYKTKIF 480 PDGWEPSVPF HPSHVITQNL FRKESHYDPI LDNVEQTGAK DGPFEVSYSD PGVSVNNAHF 540 QSNKSQKEKL LDDNHAEDTG KASRLSSSCA NRLKLDEPRQ QKELQIDGCG QEYESGADIK 600 RDENVLNESK ARKYFHAALV EYVKELVKPA WREGILSKDA HKIIVKKAVD KVLSTLQSDQ 660 IPNTAESIKS YLSISQVKLL KLVEVSVTFL VSFIS

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MPSSSAAVPP YPSQPSPAGG QEGEDEIEYE SEYEEIEEEI EVEEDVEVEE EVEEQVAEGK  60
RKAGDDSEIG EDLTPVRKEN NLIDNDEDMD LEQDEERLNP DPLAMRMSVV NPQVDINTNE  120
VFCGGFLSSE RIEGGKKEDL CTNEKKTFRD TDSRASLDGN FEVKVKNNGH NATLTITDAC  180
SQEDSGDGFA VPKPLQTAVE AVKVMEEIPL RMSGALVTSR DSSYGDGFDV GNKRPRIVCE  240
FHAKGWCIRG KSCRFLHIKE GSDASVQQKS EFIQYCHGKY LVFDFHQTGL LAVTATSSVD  300
MLPPESRNNP VNLQIQQSVG HKHNMFDGAR EKAGKIPVGQ NSCLDDFNRY TCPPVKCQSF  360
ETNRELQGNF YGASCDTYKS RIFSSGTKET VGKRNELMPD AHRLNLSFHS RPPVPFASSS  420
WMTNALVTWN SLESNQEYRA SISSSFRKSP TPLSGSNSGC LSGSNNLTNT QPTKYKTKIF  480
PDGWEPSVPF HPSHVITQNL FRKESHYDPI LDNVEQTGAK DGPFEVSYSD PGVSVNNAHF  540
QSNKSQKEKL LDDNHAEDTG KASRLSSSCA NRLKLDEPRQ QKELQIDGCG QEYESGADIK  600
RDENVLNESK ARKYFHAALV EYVKELVKPA WREGILSKDA HKIIVKKAVD KVLSTLQSDQ  660
IPNTAESIKS YLSISQVKLL KLVEVSVTFL VSFIS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV57568.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3004	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-16	C3H family protein