PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV57745.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 216aa MW: 23516.8 Da PI: 8.2198

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV57745.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97	1.9e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA r+ +Pv+Gavg++++++++++q+++e+ KZV57745.1 2 SCNGCRVLRKGCSETCVLRPCLqwiesAEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQAAVET 100 6*******************9999777889**************************************************************999 PP DUF260 95 all 97 +l+ KZV57745.1 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.618	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCVLR PCLQWIESAE AQGHATVFVA KFFGRAGLMS FISNVPENQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALKPI QQFLGDDASD 120 PDASSGCLNM FTLQDPGLVS RSKVHKRRRF PDDPAKIKQL SDLDLSLSAD HFQGKKTNPL 180 PEKRRLGSPS LNSEESMTTT CGDQPANDAK LLNLFN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV57745.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099355.1	1e-124	LOB domain-containing protein 37-like
Swissprot	Q9FN11	4e-77	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2Z7DEJ6	1e-158	A0A2Z7DEJ6_9LAMI; LOB domain-containing protein 37
STRING	XP_009801229.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	6e-74	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]