PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57864.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family E2F/DP
Protein Properties Length: 174aa    MW: 19801.3 Da    PI: 4.5209
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57864.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP61.99.3e-2010702671
     E2F_TDP 26 tlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                + ++va+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  KZV57864.1 10 NPSQVADELVAEfsdpdisnatpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 70
                5579************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.2E-13170IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.2E-17870IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.53E-141171IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.7E-291275IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011381.1E-577174IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.06E-1577140No hitNo description
PfamPF087811.7E-1478140IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MFQEQGIKLN PSQVADELVA EFSDPDISNA TPDQQQYDEK NIRRRVYDAL NVLMAMDIIS  60
KDKKEIQWRG LPRTSLIDVE ELKNERLGFR NRTGKKAAYL AELEEQYVGL QNLIQRNEQQ  120
YGLGNAPSGG VPLPFIMVQV EYMRNSPRFA SSIDQVNCCD QPSLATPNTF LTTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-2112753293PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57864.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689402.16e-72transcription factor-like protein DPB
RefseqXP_027068073.13e-71transcription factor-like protein DPB isoform X1
RefseqXP_027068074.13e-71transcription factor-like protein DPB isoform X2
RefseqXP_027123244.13e-71transcription factor-like protein DPB isoform X1
RefseqXP_027123245.13e-71transcription factor-like protein DPB isoform X2
RefseqXP_027173114.13e-71transcription factor-like protein DPB isoform X1
RefseqXP_027173115.13e-71transcription factor-like protein DPB isoform X2
RefseqXP_027173131.13e-71transcription factor-like protein DPB isoform X1
RefseqXP_027173132.13e-71transcription factor-like protein DPB isoform X2
SwissprotQ9FNY24e-67DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2Z7DFR21e-126A0A2Z7DFR2_9LAMI; Transcription factor-like protein DPB
STRINGPOPTR_0016s09640.13e-70(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.21e-69Transcription factor DP