PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV58288.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 386aa    MW: 42685.3 Da    PI: 5.6204
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV58288.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31196254259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  KZV58288.1 196 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSEHNHP 254
                 699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.765190256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-31190256IPR003657WRKY domain
SuperFamilySSF1182902.48E-26193256IPR003657WRKY domain
SMARTSM007744.9E-38195255IPR003657WRKY domain
PfamPF031064.8E-26197254IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MENYEGDLAD IVRASVSGNS AASTSITDMQ VPSSQIEWYS INHSDYDFGN PFNQLGDPLR  60
IDAPVPGFVL NPDRMKSNSS SNGGLEAFGE NHMIMDDHEM STKRSCNLFS RTLYVSSNPA  120
LSPCDPSSSS MLLSNDPVLA FPDSSKLGSL LESPALQISP PRNPGIKRRK SQAKKVVCIP  180
APAPANTRHS GEVVPSDLWA WRKYGQKPIK GSPFPRGYYR CSSSKGCSAR KQVERSRTDP  240
SMLVITYTSE HNHPWPTQRN ALAGSTRSHP VKTNNPAARK SPNARALKPS SPNEEKKEVF  300
ATDCAILKEE KDPDFDNQLE MDDHYEDFFG NLGEIEPDPL DFLFTQGFSG DEGSENKTLD  360
PLSFYDWPEN CDYPAARTHH QNQPGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25170257280Disease resistance protein RRS1
5w3x_D2e-25170257280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV58288.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022892495.11e-119probable WRKY transcription factor 35
SwissprotO647473e-76WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A2G9I5D21e-133A0A2G9I5D2_9LAMI; Uncharacterized protein
STRINGXP_010036632.11e-110(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-78WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]