PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV58725.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 210aa    MW: 23733.4 Da    PI: 6.9357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV58725.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-182974147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l  +v+++G ++W++I++++  gR++k+c++rw + 
       KZV58725.1 29 KGPWSAEEDMILTSLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 74
                     79*****************************9.***********985 PP
2Myb_DNA-binding55.71.1e-1783125347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede+++ a++q+G++ W+ Iar ++ gRt++ +k++w++ 
       KZV58725.1  83 PFSEAEDEIILAAHEQYGNR-WAMIARLLP-GRTDNAVKNHWNST 125
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2332475IPR017930Myb domain
SuperFamilySSF466895.75E-3227122IPR009057Homeodomain-like
SMARTSM007171.1E-152877IPR001005SANT/Myb domain
PfamPF002491.8E-172974IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-253082IPR009057Homeodomain-like
CDDcd001673.01E-143173No hitNo description
PROSITE profilePS5129423.88676130IPR017930Myb domain
SMARTSM007174.3E-1580128IPR001005SANT/Myb domain
PfamPF002494.7E-1483125IPR001005SANT/Myb domain
CDDcd001671.19E-1283126No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2283129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDIFNRCSPA SSSSTDSFEN ETPTTERIKG PWSAEEDMIL TSLVERYGAR NWSLISKYIK  60
GRSGKSCRLR WCNQLSPNVE HSPFSEAEDE IILAAHEQYG NRWAMIARLL PGRTDNAVKN  120
HWNSTLGRRY QQQQTQKQGA GEQRDTKKNV NDFDENDPMT ALTLAPPGMI GGGGGTPEFW  180
DGMRKVIARE VRHYVTSSFP ESSGMGFQYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-42281296107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV58725.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083803.11e-93transcription factor MYB44-like
SwissprotQ9SN127e-50MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A2Z7DFK11e-157A0A2Z7DFK1_9LAMI; Uncharacterized protein
STRINGAquca_007_00580.18e-80(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-51myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]