PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV58766.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Whirly
Protein Properties Length: 157aa    MW: 17696.3 Da    PI: 5.929
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV58766.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly67.62.3e-211774260
      Whirly  2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsat 60
                +yk+kaal v+++ p+f+ l+sg++kl+++G++ll++a+a+++r+ydW++kq+ alsa 
  KZV58766.1 17 IYKGKAALAVEPRPPEFSPLESGAFKLSKEGFILLQFAPAAGVRQYDWSRKQE-ALSAL 74
                9**************************************************97.56665 PP
2Whirly21.83.2e-0792119111138
      Whirly 111 vtnslvkgnesfsvPvskaefavlrsll 138
                 v+n+lv+++e++++P++kaefavl s +
  KZV58766.1  92 VQNKLVNVDENIYIPITKAEFAVLVSSF 119
                 89**********************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.5E-27574IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544475.34E-459156IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.5E-201777IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.106.7E-1591142IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MFVAGQYPPR VYVGYTIYKG KAALAVEPRP PEFSPLESGA FKLSKEGFIL LQFAPAAGVR  60
QYDWSRKQEA LSALGLEILV NFFMILIKEE GVQNKLVNVD ENIYIPITKA EFAVLVSSFN  120
FILPCLLGWH TFANSTRPED ASRLNNANST VDYEWNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A3e-64515632219p24: plant transcriptional regulator PBF-2
1l3a_B3e-64515632219p24: plant transcriptional regulator PBF-2
1l3a_C3e-64515632219p24: plant transcriptional regulator PBF-2
1l3a_D3e-64515632219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV58766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847743.19e-71PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL851e-64WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A2Z7DFX61e-112A0A2Z7DFX6_9LAMI; DNA-binding protein p24
STRINGMigut.L01333.1.p3e-70(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.23e-64ssDNA-binding transcriptional regulator