PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0001s0097.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 227aa MW: 24740.4 Da PI: 6.289

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0001s0097.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.5	1.2e-11	10	55	5	50
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++s+++v fsk ++ K +EL +LCd++++ i+ ++++ y+++ Kaladp0001s0097.1.p 10 DDSKKTVDFSKKASTLTKQIYELTTLCDVQACFILRTPHNQTYTWP 55 6899*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.386	10	58	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-11	10	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-11	10	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MKQLGHQNAD DSKKTVDFSK KASTLTKQIY ELTTLCDVQA CFILRTPHNQ TYTWPESVDQ 60 VGRVVGLFKS KAGTTTGKIA RDVTPDERRL KDMPTAQAEN LLKRLEDRIE ALTAKIANAE 120 GGDDITKIGS NPDGGEIMKR FSFKEKLKEL TAGQAMTLSS ELDAKIEALT TKIDNGEGRH 180 AKSTIAGNND KGMNPAVDMD CSADNDDSWT XXXXXXXXXX GAKSVV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31630.1	1e-08	AGAMOUS-like 86

Link Out ? help Back to Top
Phytozome	Kaladp0001s0097.1.p