PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0001s0197.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 277aa MW: 31051.8 Da PI: 10.7803

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0001s0197.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.9	6.6e-17	20	110	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffkv++p++++ rl +pk f+e++ +g+ ++ + l + g++W+v + k++ ++ kGWk F k n + + Df+vF++ g++ Kaladp0001s0197.1.p 20 FFKVFVPEYSS--VRLKIPKGFVENNmKGE--KGNCVNLVVSGGQKWRVGF--VVKRKDWFFNKGWKAFLKGNAVSSFDFLVFRYLGSMA 103 89999777766..569*****9885444..55579999*******..666667889***********************999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v++f Kaladp0001s0197.1.p 104 F--HVTIFG 110 9..999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-23	14	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-20	16	114	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.28E-16	18	109	No hit	No description
PROSITE profile	PS50863	12.478	18	112	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-13	20	109	IPR003340	B3 DNA binding domain
SMART	SM01019	6.0E-12	20	112	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-6	171	273	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-9	172	273	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MAGAGGAGRF GEERDRQPQF FKVFVPEYSS VRLKIPKGFV ENNMKGEKGN CVNLVVSGGQ 60 KWRVGFVVKR KDWFFNKGWK AFLKGNAVSS FDFLVFRYLG SMAFHVTIFG PNGCAKLSAS 120 SGDLPKAVGV DTEKRRQNRQ NLFKRVQMGS EKRGPGRHHV FTPAEQKAAD SFTSSLPFFV 180 KTLAWKSKQS PIMYLPHSSL KQHSITCSHN QRIVLRSLDG YRQQVKIGKY PYVCSLGEGL 240 TQFMRHVNAS DGDVLIFQVL SRFPLEMLVQ IADKTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	3e-13	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0001s0197.1.p