PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0214.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 212aa    MW: 23623.3 Da    PI: 4.9177
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0214.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC29.61.5e-09991881199
                NF-YC  11 ekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                          e++++ ++  +P+ ri+ i k++ ed  ++s ea  ll ka e f+ +l   ++ ++ +++++ +    ++a+v++ +   fl d +p++
  Kaladp0001s0214.1.p  99 EEEEEGAKCLFPMNRIRMIAKSEgEDDMRLSHEAIFLLNKASEKFLGHLCEEAYGETVNQRKNFVAYDHLSASVSKNQRLCFLSDLIPEK 188
                          45556667889**********983455569********************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.27E-13101189IPR009072Histone-fold
PfamPF008083.8E-10109171IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.4E-17109187IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRNTRSTPRK GQKPTTKTKK KGHVSNGDVT EAEVASPATL SSPDSIPEPP YSDSVGSDNK  60
SVAEEEDEVE EGAEEQEVEV VKKKTVLKQN GKKRKVEEEE EEEGAKCLFP MNRIRMIAKS  120
EGEDDMRLSH EAIFLLNKAS EKFLGHLCEE AYGETVNQRK NFVAYDHLSA SVSKNQRLCF  180
LSDLIPEKIS VEEALKERQL ANCDPRDPTT N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2byk_A3e-13911932104CHRAC-16
2byk_C3e-13911932104CHRAC-16
2bym_A3e-13911932104CHRAC-16
2bym_C3e-13911932104CHRAC-16
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18293KKTVLKQNGKKR
28694LKQNGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021654289.13e-31glutamic acid-rich protein
TrEMBLA0A2P5DEY03e-29A0A2P5DEY0_PARAD; Transcription initiation factor
STRINGcassava4.1_015531m2e-29(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-24nuclear factor Y, subunit C10