PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0216.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 807aa    MW: 88487 Da    PI: 7.4391
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0216.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23186287199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L  gD v+F  
  Kaladp0001s0216.1.p 186 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTSGWSLFVSQKNLGLGDAVLFL- 273
                          99****************************963.3445679************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + +++el+++++r+
  Kaladp0001s0216.1.p 274 -RGESGELRLGIRRA 287
                          .449999*****996 PP
2Auxin_resp109.14.7e-36312393182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +a+a+ tk+vF+v+Y+Pra+ +eFv++++k++k++ +++  G++fkm+fe++ds+err+sG+v+g+ dldp+rWpnSkWr+L
  Kaladp0001s0216.1.p 312 VANAILTKNVFQVFYSPRATLAEFVIPIQKYMKSIIHPIPTGTKFKMRFEMDDSPERRCSGIVTGMGDLDPYRWPNSKWRCL 393
                          68999****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-40179295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-42180298IPR015300DNA-binding pseudobarrel domain
CDDcd100174.72E-23184286No hitNo description
PROSITE profilePS5086312.915186288IPR003340B3 DNA binding domain
SMARTSM010192.2E-24186288IPR003340B3 DNA binding domain
PfamPF023625.6E-22186287IPR003340B3 DNA binding domain
PfamPF065071.0E-30312393IPR010525Auxin response factor
PfamPF023091.2E-5668756IPR033389AUX/IAA domain
SuperFamilySSF542773.73E-9668751No hitNo description
PROSITE profilePS5174520.635672767IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MELGGNHAVR LEGRKRSYLS CDGDCGDKAG CARCWSSSSS SSSSSNSPAS LASSIYLELW  60
HACAGPLTSL PKKGNVVVYF PQGHLEQVAS NSPFSPMEMP TYDLQPQIFC RVLNVQRLVS  120
TISTSDIYSI SCKCYSSKAN KENDEVYTQL SLLPQPELAG LKLSGSDMLS ENGSDELALK  180
STPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH  240
IYRGQPRRHL LTSGWSLFVS QKNLGLGDAV LFLRGESGEL RLGIRRAVRP RNCLPDSAIG  300
NQSSLPTVLS SVANAILTKN VFQVFYSPRA TLAEFVIPIQ KYMKSIIHPI PTGTKFKMRF  360
EMDDSPERRC SGIVTGMGDL DPYRWPNSKW RCLMVRWDED HASEHQERVS PWEVDASICL  420
PPPMSFHGSP QLKKLRTCLQ SSLQSGLADD LSTGGSGFLD LEESMRSSSK VLRGQENSGF  480
RSPYLLNQPL GSSKPSQATV LEGLNIQSTG YTTFGKSDVF PTVLQGQEVC PYSAWRKPSI  540
GCCNLSSTHQ RPEPSFYPVA SAGSRSVYFP LHSGIQKEMQ GPAVSLSSRF AGGSGPFGRP  600
PVYNGMDIDE PRRFVPMNAQ KVPVDAAASL PHSLEAAAKD GRNETSSAAP TACRLFGISL  660
TGETSTQNAS KRSCTKVHKQ GSMVGRAIDL SKLNGYTDLL FELEWLFAME GLLRDPEKGW  720
RILYTDSEND MMVVGDDPWH EFCEVVSKIH IYTKDEVEKL NIGVVASDDT QSCLEEAPEG  780
AGVSKSSSVG QPESYPTKKK GLERLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-114394152353Auxin response factor 1
4ldy_B1e-114394152353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279163.10.0LOW QUALITY PROTEIN: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLD7SKV90.0D7SKV9_VITVI; Auxin response factor
STRINGVIT_06s0004g03130.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]