PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0264.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 283aa    MW: 29979.2 Da    PI: 5.4137
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0264.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16198233134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg
  Kaladp0001s0264.1.p 198 CLHCGTSSkfTPMMRRGPAGPRTLCNACGLKWANKG 233
                          99******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.5E-136095IPR010399Tify domain
PROSITE profilePS5132014.9946095IPR010399Tify domain
PfamPF062001.3E-126394IPR010399Tify domain
PROSITE profilePS5101713.632127169IPR010402CCT domain
PfamPF062031.4E-16127169IPR010402CCT domain
SMARTSM004011.0E-9192245IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.946192249IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12193243No hitNo description
Gene3DG3DSA:3.30.50.104.1E-15197239IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-13198233IPR000679Zinc finger, GATA-type
PROSITE patternPS003440198225IPR000679Zinc finger, GATA-type
CDDcd002027.35E-16198247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQQAEEAMNL HNSIEEADDD DDGGGGGGGR VEEGLNGGGE VVHHHALYAP PSTEFAPSVP  60
AGGPDQLTLS FQGEVYVFDA VSPDKVQAVL LLLGGYEVPP TIGNMGPTPP SNRGLGDFSV  120
RSSQPHRAAS LSRFREKRKE RCFEKKIRYD VRKEVAERMK RKKGQFTSSK ASSDEIVSAS  180
PDWNGGQGSA PDDQETLCLH CGTSSKFTPM MRRGPAGPRT LCNACGLKWA NKGILRDLTK  240
VAPPAIEDGP LKPQEQNAGN ASDSDAALPP TNGNYSSMAG DS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093061.11e-113GATA transcription factor 28-like isoform X2
SwissprotQ8GXL78e-74GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2R6Q6311e-105A0A2R6Q631_ACTCH; GATA transcription factor
STRINGXP_010112233.11e-106(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-68ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]