PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0005s0030.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 207aa    MW: 22860.1 Da    PI: 8.2288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0005s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00144264123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  C k+F++   L  H  +H
  Kaladp0005s0030.1.p 42 FECRTCRKRFTTFQALGGHRASH 64
                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-740112No hitNo description
PfamPF139126.8E-104166IPR007087Zinc finger, C2H2
SMARTSM003550.674264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5934269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139128.3E-1089114IPR007087Zinc finger, C2H2
SMARTSM003551.190112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.05890112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSSSCEETPS KPTVETAATC LMLLSKLDES HAQPSRDDIR AFECRTCRKR FTTFQALGGH  60
RASHKKPKPD HDSFFQSKNT TVTPPRPKAH ECAICGAEFA LGQALGGHMR RHRDGANGVV  120
LGSGSGDTTA FGEVHVMGER VCLKMDLNLT PGENELQMCV PDLKLQLGKR EYEIRMESGT  180
VQEYDLWTQL RKRRRFGEAL LGLVAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748803.11e-39zinc finger protein ZAT12-like
STRINGcassava4.1_017982m7e-38(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-31C2H2 family protein