PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0006s0024.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 339aa    MW: 37892.5 Da    PI: 5.108
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0006s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.7e-082853172355
                          SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yp+++++  L++ +gL+++q+ +WF N+R ++
  Kaladp0006s0024.1.p 285 PYPTEADKIALTECTGLDQKQINNWFINQRKRH 317
                          8*****************************885 PP
2ELK37.64.6e-13237258122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK+ LlrKYsgy++sLk+EFs
  Kaladp0006s0024.1.p 237 ELKDKLLRKYSGYISSLKHEFS 258
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-1896140IPR005540KNOX1
PfamPF037902.6E-1798136IPR005540KNOX1
SMARTSM012561.9E-18147198IPR005541KNOX2
PfamPF037911.8E-20151197IPR005541KNOX2
PfamPF037898.4E-11237258IPR005539ELK domain
PROSITE profilePS5121310.912237257IPR005539ELK domain
SMARTSM011886.9E-8237258IPR005539ELK domain
PROSITE profilePS5007111.256257320IPR001356Homeobox domain
SMARTSM003892.9E-9259324IPR001356Homeobox domain
SuperFamilySSF466891.8E-17259329IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-24262321IPR009057Homeodomain-like
PfamPF059208.7E-17277316IPR008422Homeobox KN domain
CDDcd000861.41E-10283321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAEMYGCLDF ATTDFTSSTP PPPPSRHRHP LILSPLPPPP NSSLISPDDD FASFSSPSFR  60
DHHPMFGSEP SSFISVSSAM SDAASAAEIQ DGDFSSALRA RVATHPLYPR LLEAYMDCQK  120
VGSPPEVAYV LDEIRRGDND LFGAGSVTTY FGADPELDYF MESYCDILAT YRSDLARPFH  180
EATSYLYNME AQLSSLCNCN GASLSRVSDE AAGSSEEDLS GGESADVQFL RTSVDLELKD  240
KLLRKYSGYI SSLKHEFSQK KKKEKLPKDA KIMLLGWWRD HYKWPYPTEA DKIALTECTG  300
LDQKQINNWF INQRKRHWKP SENMQFAVMD IGQPLVHK*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282076.11e-124PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS62e-95KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7SHP31e-123D7SHP3_VITVI; Uncharacterized protein
STRINGVIT_17s0000g08710.t011e-123(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-77KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]