PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0006s0090.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 547aa    MW: 58899 Da    PI: 8.3033
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0006s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.65.7e-41128205178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqv++C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Kaladp0006s0090.1.p 128 TCQVDSCMVDLSDAKDYHRRHKVCEAHSKATQALVGKQMQRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNRRRRKTQP 205
                          6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-33122190IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.915126203IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37127207IPR004333Transcription factor, SBP-box
PfamPF031101.5E-29129202IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MARKRDLSYQ QQELMIDQPY HPSGGLQNSR DYWNSKGWNW DCTRFVAQQV NQNAMNLDIP  60
VQSTQNKSNI NGVAVEDDGS LCLKLGSGSG GSSSSDEPQL RPAKRVAASP GGKNSRSPGA  120
GGNGNHPTCQ VDSCMVDLSD AKDYHRRHKV CEAHSKATQA LVGKQMQRFC QQCSRFHVLS  180
EFDEGKRSCR RRLAGHNRRR RKTQPDDATS RLLSAGGQEN AVNTGLDLVG LLAALARAQG  240
NQDNANCAPA IVPNNEQLIQ LISKINSFPP PTNATTKLPV SDNLEITIRE ASSEHQSGSS  300
PNSSSQSTLN LLGVLPHASP VSVPDVSAMP SQRSSRSSDS EKTKSADTYQ PGPLVLRKRT  360
TLDLSSFGGE RSSNSCHYPV EDSNSQDTQA NLPLQLFFSS PEDNNSPPKM ANSSKYFSSD  420
SSNQNEDRSP SSSPGVQLFP VKPSKQRVNH DRITDVVNAT TQVGRTPGGT VSFDLFGGSN  480
KGVEVDFFRG SPNQAGYASP VSATSPSSST CGAQDLTGRI LFKLFDKDPS HLPVALRSEV  540
CILDAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30119202184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021283617.11e-146squamosa promoter-binding-like protein 14
TrEMBLA0A2R4K3511e-144A0A2R4K351_LITCN; Squamosa promoter binding-like protein
STRINGVIT_18s0122g00380.t011e-144(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.14e-83squamosa promoter binding protein-like 14