PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0007s0081.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 454aa MW: 49442.8 Da PI: 8.9507

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0007s0081.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	190	211	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cg+ Fs ++ + H + H Kaladp0007s0081.1.p 190 CHKCGEQFSEWEAVEAHHLSmH 211 *****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.97	188	216	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	190	211	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.33E-14	259	452	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MATVWLSLKN SMHCKSGPTD VHDPKSRTHL STILTKKIGR SGCSRSIANL KDAIHGSKRH 60 LDRPPSCSPR SIGSSDFLNP ITHEVILSNS RCELKITSFA GFQDGTNYGG RWCTSGVGGS 120 TFVGTLRPGT PGPGGKTAIS PFYKNSSWAT PLGNLLFCHK QGSGLGGAQL SQHWCSFGAD 180 SNSASSSVAC HKCGEQFSEW EAVEAHHLSM HAGDYPYWSI FFSSNLFSSV CLGLYKIVQI 240 NVRLDLDLHK IKRFLSLTVT ELVEGDSSRK VAEIICRTSC LKAENPCGRI EKVLKVHNMQ 300 KTLARFEEYR EAIKIKANKL PTKHPRCLAD GNELLRFYGT TVSCSLGLYG RSSLCIVDKC 360 CVCRILRNGF SAKKELKCGI GVFTISTSGR AFEIIETLED NGPSIRKANI QDIAGQSGFD 420 SLAGKVGLYS NIEELYLLNP KALLPCFVVI CKS*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MATVWLSLKN SMHCKSGPTD VHDPKSRTHL STILTKKIGR SGCSRSIANL KDAIHGSKRH  60
LDRPPSCSPR SIGSSDFLNP ITHEVILSNS RCELKITSFA GFQDGTNYGG RWCTSGVGGS  120
TFVGTLRPGT PGPGGKTAIS PFYKNSSWAT PLGNLLFCHK QGSGLGGAQL SQHWCSFGAD  180
SNSASSSVAC HKCGEQFSEW EAVEAHHLSM HAGDYPYWSI FFSSNLFSSV CLGLYKIVQI  240
NVRLDLDLHK IKRFLSLTVT ELVEGDSSRK VAEIICRTSC LKAENPCGRI EKVLKVHNMQ  300
KTLARFEEYR EAIKIKANKL PTKHPRCLAD GNELLRFYGT TVSCSLGLYG RSSLCIVDKC  360
CVCRILRNGF SAKKELKCGI GVFTISTSGR AFEIIETLED NGPSIRKANI QDIAGQSGFD  420
SLAGKVGLYS NIEELYLLNP KALLPCFVVI CKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606656.1	0.0	uncharacterized protein LOC110610892
TrEMBL	A0A2C9W6P3	0.0	A0A2C9W6P3_MANES; Uncharacterized protein
STRING	Gorai.002G081400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	3e-94	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0007s0081.1.p