PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0090.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 674aa    MW: 75017.9 Da    PI: 6.688
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.92.6e-25126226198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv+a++L +gD++vF   
  Kaladp0008s0090.1.p 126 FCKVLTASDTSTHGGFSVLRKHATEClppldMSQPTPTQELVAKDLHGVEWRFKHIFRGQPRRHLLTTGWSTFVSAKRLVAGDSFVFL-- 213
                          99*****************************77777888*************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Kaladp0008s0090.1.p 214 RGDDGELRVGVRR 226
                          3489999****98 PP
2Auxin_resp90.72.5e-30251329182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          a+ha++ +++F+v+Y+Pr+  s+F+v+v+k+++a k+ + vG Rfkm+fe+eds+er +sGt+vg+ ++++ +W +SkWrsL
  Kaladp0008s0090.1.p 251 ASHAVTAQTMFQVYYKPRK--SQFIVSVNKYLEANKCGFGVGKRFKMRFEGEDSPERWFSGTIVGLDNISQ-QWADSKWRSL 329
                          689***************6..9**********************************************666.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-37115236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-40122237IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-22124226No hitNo description
SMARTSM010194.4E-24126228IPR003340B3 DNA binding domain
PfamPF023622.0E-23126226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266126228IPR003340B3 DNA binding domain
PfamPF065078.7E-28251329IPR010525Auxin response factor
PfamPF023097.6E-7546595IPR033389AUX/IAA domain
SuperFamilySSF542777.06E-13553635No hitNo description
PROSITE profilePS5174526.493559640IPR000270PB1 domain
PfamPF023091.6E-6605647IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MMMPSRCTNS SGEGTGGDEG LYEELWKACA GPLVDVPRPG EKVYYFPQGH LEQLEASTNQ  60
ELDQRITMFK LPSKILCKVL NVYHLAEPET DEVYAQITLF PETEQTEPTK PDPCLPEPRR  120
RTIHSFCKVL TASDTSTHGG FSVLRKHATE CLPPLDMSQP TPTQELVAKD LHGVEWRFKH  180
IFRGQPRRHL LTTGWSTFVS AKRLVAGDSF VFLRGDDGEL RVGVRRLACQ QNNMPSVICS  240
QSIQLGVLAS ASHAVTAQTM FQVYYKPRKS QFIVSVNKYL EANKCGFGVG KRFKMRFEGE  300
DSPERWFSGT IVGLDNISQQ WADSKWRSLR VQWDEPAAIP RPDRVSPWEI ETLTPTVPAC  360
ISTAIPSKNK RLCMPGDMQV PETSNASGLW HHKPDNTNVT HFSSNNGSCI SRTYTDVGWL  420
SPQGHHSKLK AEHISSNGSS ANRQTDKSIH AAAWPAVMTQ TNLHMLKSNN DALFDSGEVR  480
KKLEAPTSCR LFGIELINPS PVEKPIVQPV CASVGSAEGN IPDTPSAAES EQNSELSKAF  540
KVKQLEQTKG KLSSSTSTRS RTKVQMQGVA VGRAVDLTTL EGYDHLIDEL EDMFEIKGEL  600
KPRNKWEIVF TDDEGDMMLV GDDPWPEFCS MVRRIFICSS QEMKNLRSRS NLPVPSIELG  660
EPTTMLSSDS TEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16773533355Auxin response factor 1
4ldw_A1e-16773533355Auxin response factor 1
4ldw_B1e-16773533355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659520.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLD7TVI50.0D7TVI5_VITVI; Auxin response factor
STRINGVIT_02s0025g01740.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9