PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0125.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 130aa MW: 14488.6 Da PI: 10.2971

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0125.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.3e-06	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kaladp0008s0125.1.p 54 FVCEICNKGFQRDQNLQLHRRGH 76 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.18E-5	52	77	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.6E-6	53	76	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	54	76	IPR007087	Zinc finger, C2H2
Pfam	PF12171	1.3E-5	54	76	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MPGDATAASA EEACVFSSGT QAAVKRKRSL PGVPDPDAEV VALSPKTLMA TNRFVCEICN 60 KGFQRDQNLQ LHRRGHNLPW KLRQRISKEV RKKVYVRPDT SCVHHDRTRA LGDLTGIKKH 120 FSRPEEVEI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	92	KLRQRISKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002281605.1	1e-61	PREDICTED: protein indeterminate-domain 2 isoform X1
Refseq	XP_010664668.1	1e-61	PREDICTED: protein indeterminate-domain 2 isoform X2
Refseq	XP_020250876.1	6e-62	protein indeterminate-domain 11-like
Swissprot	Q9LVQ7	5e-60	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2P2K667	8e-62	A0A2P2K667_RHIMU; Uncharacterized protein MANES_13G137400
STRING	VIT_18s0001g12220.t01	3e-61	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	2e-62	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Kaladp0008s0125.1.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]