PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0226.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 251aa    MW: 27435.1 Da    PI: 6.1481
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0226.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.21.1e-2831125186
             trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                          rWt+qe+l+Li+++r +e+r+rrg+         + +p+W++vs++++++g++r+++qC+++w+nl+++ykkike+e++ ++e++s +++
  Kaladp0008s0226.3.p  31 RWTRQEILVLIQGKRVVETRVRRGRasgltfgpgQVEPKWASVSSYCKRHGVNRGAVQCRKRWSNLAGDYKKIKEWESQTKEETESFWVM 120
                          8**********************97778888888*********************************************99999999999 PP

             trihelix  82 fdqle 86 
                           ++l+
  Kaladp0008s0226.3.p 121 RNDLR 125
                          99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3533197IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.0E-53196IPR009057Homeodomain-like
PfamPF138374.3E-1331121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MALSLAVDGG DADGVAAVAA EETAKAPRLP RWTRQEILVL IQGKRVVETR VRRGRASGLT  60
FGPGQVEPKW ASVSSYCKRH GVNRGAVQCR KRWSNLAGDY KKIKEWESQT KEETESFWVM  120
RNDLRREKKL PGFFDREVYD ILEGDSPATC LALALGPALQ ADADDAEAVF DSGRTTAAAA  180
AQDGLFSDED DGNETPLSKE SPPTRVAAPL PISEKVYQPY SSSAQGHIIF NQLRLLLHIH  240
LCCLAIDILV *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088721.11e-101trihelix transcription factor ASR3
SwissprotQ8VZ203e-77ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A067JH782e-99A0A067JH78_JATCU; Uncharacterized protein
STRINGXP_002512665.14e-97(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-78Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]