PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0291.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 602aa    MW: 65081.6 Da    PI: 6.6619
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0291.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000192042123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cgk F++   L  H+r+H
  Kaladp0008s0291.1.p 20 HVCTLCGKGFRSGKALGGHMRVH 42
                         79*******************99 PP
2zf-C2H211.60.0008397115321
                          ETTTTEEESSHHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                          Cp+C + F+++  L  H+r
  Kaladp0008s0291.1.p  97 CPICRRDFPSNKALFGHMR 115
                          ******************8 PP
3zf-C2H211.70.00081408430123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+k+F+++  L  H ++H
  Kaladp0008s0291.1.p 408 YKCTTCSKTFTSHQALGGHKSSH 430
                          9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-41943IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.5E-82042IPR007087Zinc finger, C2H2
SMARTSM003550.00632042IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.44E-72042No hitNo description
PROSITE profilePS5015711.1152047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-790117No hitNo description
PROSITE profilePS501578.62195122IPR007087Zinc finger, C2H2
SMARTSM003550.08995117IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-696119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
PfamPF139129.2E-9407431IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-5407430No hitNo description
SMARTSM003550.034408430IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24408435IPR007087Zinc finger, C2H2
PROSITE patternPS000280410430IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-5480507No hitNo description
PfamPF139121.9E-7485509IPR007087Zinc finger, C2H2
SMARTSM003553.1485507IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280487507IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MPERSCESDS MRDKEVEEEH VCTLCGKGFR SGKALGGHMR VHAQRHRSDQ LKTSVVDGAA  60
ADGSCDMDVD EEEDEDDEVK RSCDELQMKD GGGKPICPIC RRDFPSNKAL FGHMRCHPER  120
KWRGIQPPVY SSSSTVSDVQ AHSSSSSHKS DHNDGDPFKS EVTDLEKDLL NFGWAAKARR  180
GREGTVKSIA PEQAAGVQNL ILLSRGGVDV KSRNKAEVGA EIKSKPLPAG PAIRDSTNFT  240
RKLKLRGAEV ESRGRVDHGS QKRRRKKRKT SQVLTTEEVS GLTNSGKKSK LADEEVEGSH  300
DDGTQDLMIV ESNPLHQLSG RRPPMISATE AGADVMPLEK VDASPHGYNA AELMQADLIE  360
TKKTQKVRKY LMISDLKPMS ANLPHSSPVN PPPLHQDINT EVSDNERYKC TTCSKTFTSH  420
QALGGHKSSH NKLRNPQVFR TDLPRPDSFT TQGGGSGNVD AGASHISGLI MAAAASAATP  480
VHPMHQCNVC FKIYPTGQAL GGHKRLHCSL TTNKTLPLPP PSIVIQEPAE AAASFHPSAP  540
PLAQASDNDH GVVGRFDLNE LPAVEDEDDQ HAAVIQPVDN IAAGDDKDAH EPGDSPAALD  600
Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260267QKRRRKKR
2260268QKRRRKKRK
3262267RRRKKR
4262268RRRKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.19e-18C2H2 family protein