PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0293.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 68aa    MW: 7735.75 Da    PI: 10.7238
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0293.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.2e-0944633857
                         TS-HHHHHHHHHHHHHHHHC CS
             Homeobox 38 gLterqVkvWFqNrRakekk 57
                         +L+ +++++WFqN++a+e++
  Kaladp0008s0293.1.p 44 KLEGKNIFYWFQNHKARERQ 63
                         89****************97 PP
2Wus_type_Homeobox422.2e-1433643364
    Wus_type_Homeobox 33 qritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         ++ +   ++  k+e+kN+fyWFQN+kaRerqk
  Kaladp0008s0293.1.p 33 EDFRGAVQARDKLEGKNIFYWFQNHKARERQK 64
                         5556666777799******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.600.0011964IPR009057Homeodomain-like
SuperFamilySSF466899.64E-54164IPR009057Homeodomain-like
PfamPF000462.0E-64463IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MDVSIKCGFS SKKGVSIHEK RFTKVESNSR AAEDFRGAVQ ARDKLEGKNI FYWFQNHKAR  60
ERQKTSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.19e-10WOX family protein