PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0391.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 278aa    MW: 31126.8 Da    PI: 5.4307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0391.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  l+++ + +G g W+ +++  g++R++k+c++rw++yl
  Kaladp0008s0391.1.p 14 KGAWTAEEDRMLAEYMEAHGDGKWRNVPNVTGLKRCGKSCRLRWLNYL 61
                         79********************************************97 PP
2Myb_DNA-binding54.42.8e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl
  Kaladp0008s0391.1.p  67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTYL 112
                          7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.74961IPR017930Myb domain
SuperFamilySSF466894.4E-2912108IPR009057Homeodomain-like
SMARTSM007179.1E-131363IPR001005SANT/Myb domain
PfamPF002492.5E-141461IPR001005SANT/Myb domain
CDDcd001673.76E-91661No hitNo description
PROSITE profilePS5129426.87362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2565116IPR009057Homeodomain-like
SMARTSM007171.6E-1666114IPR001005SANT/Myb domain
PfamPF002498.0E-1667112IPR001005SANT/Myb domain
CDDcd001677.41E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRRPCCVKE GLNKGAWTAE EDRMLAEYME AHGDGKWRNV PNVTGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEVKNYWNT YLSKKIGSSN  120
KNSTKKKQQQ PPFHVAQQTS MNHQVLLEEE KSPLVVTASE DLLKNSNYML NTNCSQKVGS  180
GSNEDCLTLE EIIEFAEFGG GKTQQNNIVV GADAGSSSTV QHDSFCLLGP ESNLAWPGHK  240
DGQWDDWLLD AMAADAEDWL PDCDVRDFQN SVETDTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024184383.17e-70myb-related protein 308-like
TrEMBLA0A2P6RYK12e-68A0A2P6RYK1_ROSCH; Putative transcription factor MYB-HB-like family
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-58myb domain protein 3