PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0410.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 712aa    MW: 78101.3 Da    PI: 8.4742
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23108209199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF 
  Kaladp0008s0410.1.p 108 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL 195
                          89****************************997556555..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++ ++el+v+++r+
  Kaladp0008s0410.1.p 196 --RTGSGELCVGIRRA 209
                          ..4479999*****97 PP
2Auxin_resp114.21.2e-37278361183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+++ +FevvY+Pra+t+eF+v ++ v++a+++++++GmRfkm fetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Kaladp0008s0410.1.p 278 AATLATNGRPFEVVYYPRACTPEFCVAASAVRAAMRIQWCPGMRFKMPFETEDSSRISWfMGTVSSVQVADPLRWPNSPWRLLQ 361
                          68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-3899217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-28103227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-21107208No hitNo description
SMARTSM010196.5E-22108210IPR003340B3 DNA binding domain
PfamPF023629.8E-22108209IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155108210IPR003340B3 DNA binding domain
PfamPF065072.7E-32278361IPR010525Auxin response factor
PROSITE profilePS5174515.715597677IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MERSLDSQLW HACAGGMVQM PKVNSKVYYF PQGHAEHAQA GLDFALSPKA GPLVPCRVAS  60
VQFLADPETD EVYAKLRLVP VGNRELEFGV EDLGVCRGSE SVDKPSSFAK TLTQSDANNG  120
GGFSVPRYCA ETIFPRLDYT ADPPVQTVIA KDVHGEIWKF RHIYRGTPRR HLLTTGWSTF  180
VNQKKLVAGD SIVFLRTGSG ELCVGIRRAK RGMESESGSG IRSQSGWSPS PGHFISPYGG  240
GGYSMFLRDD ENGFLRNGCG EGGLKTNKKV KGESVIEAAT LATNGRPFEV VYYPRACTPE  300
FCVAASAVRA AMRIQWCPGM RFKMPFETED SSRISWFMGT VSSVQVADPL RWPNSPWRLL  360
QVTWDEPDLL QNVNRVSPWL VELVSNTPAM NLPPFSSPRK KLRFPPQPDF PLDGQLSLSS  420
FSGNNLGPRS SFCCLIDNTP PGIQGARHAQ FGSSLSDIHF NSKLRSWLFP QSQQRLDQFP  480
RLFNNIISSS AKGNESESVS CLLSIGNSDH NVEKPKDGKK QPFVLFGQPI LTEQEISLRS  540
ESTLQALARN HSSDDHLERG KVHTSGLELR RSLSDTSSHP GFSRLFNFAS DELSMASGRC  600
EVFMDNDGVG RTLDLSPIQS YQQLCLKLAD LFGIGNPNAL NHALYRDATG AIKRIGDEPF  660
SDFRKSAKKL IITVDLGKKN NGREQYLSGP GKAENGLCSS KAAAGHLSIL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-81538251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882698.10.0auxin response factor 18
RefseqXP_023882705.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A438DTG80.0A0A438DTG8_VITVI; Auxin response factor
STRINGVIT_06s0004g02750.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]