PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0639.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 251aa    MW: 26392.8 Da    PI: 5.0249
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0639.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19111161255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp     k +r++lg+++t  eAa+a++aa+ k++g
  Kaladp0008s0639.1.p 111 KYRGVRRRP-WGKYAAEIRDP---ArKGARVWLGTYDTSIEAARAYDAAAFKMRG 161
                          8********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-23111171IPR016177DNA-binding domain
PfamPF008475.2E-15111161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-31111170IPR001471AP2/ERF domain
SMARTSM003807.0E-36111175IPR001471AP2/ERF domain
PROSITE profilePS5103224.79111169IPR001471AP2/ERF domain
CDDcd000185.30E-20111169No hitNo description
PRINTSPR003675.1E-13112123IPR001471AP2/ERF domain
PRINTSPR003675.1E-13151171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MNTLMASVEE ASFLDSIQQF LLTDDFVSES SSVSLQTLLS DSALSSSVGS SGSSCFGAVK  60
TEAEVSGESG VSTGGGGGLP PKPSRLSSRK PAALKVSIPA AAGADAEEDV KYRGVRRRPW  120
GKYAAEIRDP ARKGARVWLG TYDTSIEAAR AYDAAAFKMR GSRAIVNFPL EVGRVRAAAE  180
EAVESVEAPA RKRMRSAVEM VVVKEEEVVA ATPLTPSCWA AWESEEVTGI FTVPPLSPFT  240
PLGCSQQRVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-28111172566ATERF1
3gcc_A7e-28111172566ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.18e-39ERF family protein