PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0762.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 424aa    MW: 48043.7 Da    PI: 5.2063
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0762.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.76.4e-32141062102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHH.HTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLn.mYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          Fl ++ye+++d++ ++++sws++++sfvv+d+ efak++Lp++Fkh+nf+SF+RQLn +YgF+kv+ e+         weF+++ F +g+
  Kaladp0008s0762.1.p  14 FLAQTYEMVDDPTSNTIVSWSSSNTSFVVWDPPEFAKTLLPTFFKHNNFSSFIRQLNtTYGFRKVDPEQ---------WEFANDDFLRGQ 94 
                          9********************************************************55******9998.........************ PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                           + +++i+r+k 
  Kaladp0008s0762.1.p  95 PHRMKNIHRRKP 106
                          *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.1E-5710104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-3210104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-2814104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-111437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-115264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-116577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDESLGGSNA LPPFLAQTYE MVDDPTSNTI VSWSSSNTSF VVWDPPEFAK TLLPTFFKHN  60
NFSSFIRQLN TTYGFRKVDP EQWEFANDDF LRGQPHRMKN IHRRKPVHSH SVPNQGHGIS  120
SPLTEGLKRE KEVLQLELEE KKGGREEFEL HAQSLKQQLE CIIQRQEKLL AQVLNKPGLV  180
LSLTPTITSH ERKRRLLTTD CLQGEAEIDR NRLRNSQVIG MEEAVSATMS SLITEPIDLM  240
ESSIAHWEEI IHQMAQTCAE DVYNIQTPPL AVILTEIDPP LEQAVTNSEN RFYPMANSKE  300
NSLTFELDES QGYMNHVLSV QAAEVVQPTE KASESVNEAR TTTIVPTGAN DTFWEQFLTE  360
HSGSSNVQDA QFEKKGSETK KQSDHSKLWW NIPSVNNLVE QMSHLTPAER CQYAHHTHQY  420
CCG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-21510411120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316809.11e-119heat stress transcription factor A-4c
TrEMBLB9I1G81e-118B9I1G8_POPTR; Uncharacterized protein
STRINGPOPTR_0011s06820.11e-119(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.18e-78heat shock transcription factor A4A