PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0767.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 136aa    MW: 15372.3 Da    PI: 10.1079
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0767.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.43.3e-323585151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Kaladp0008s0767.1.p 35 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 85
                         79***********************************************95 PP
2K-box22.64.5e-09102135336
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqR 36 
                          +s++ s++ea+++++ qe+akL+++i nLq+++R
  Kaladp0008s0767.1.p 102 SSNTGSVSEANTQYYLQEAAKLRQQIANLQNTNR 135
                          3444559***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-412786IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6412787IPR002100Transcription factor, MADS-box
CDDcd002656.06E-4428104No hitNo description
SuperFamilySSF554551.11E-3328101IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-332949IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002983IPR002100Transcription factor, MADS-box
PfamPF003193.0E-273683IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-334964IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-336485IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEFKHIGESS SRRGEQLSDT ESPQRKIGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE  60
LSVLCDAEVA LIVFSSRGRL YEYSNNSVKA TIEKYKKACS DSSNTGSVSE ANTQYYLQEA  120
AKLRQQIANL QNTNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-222795169Myocyte-specific enhancer factor 2B
1tqe_Q7e-222795169Myocyte-specific enhancer factor 2B
1tqe_R7e-222795169Myocyte-specific enhancer factor 2B
1tqe_S7e-222795169Myocyte-specific enhancer factor 2B
6c9l_A7e-222795169Myocyte-specific enhancer factor 2B
6c9l_B7e-222795169Myocyte-specific enhancer factor 2B
6c9l_C7e-222795169Myocyte-specific enhancer factor 2B
6c9l_D7e-222795169Myocyte-specific enhancer factor 2B
6c9l_E7e-222795169Myocyte-specific enhancer factor 2B
6c9l_F7e-222795169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358066.11e-70PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_006358067.11e-70PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_006358069.18e-71PREDICTED: floral homeotic protein AGAMOUS isoform X3
SwissprotQ435852e-71AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLM1CRK91e-69M1CRK9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000731345e-70(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-57MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]