PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0827.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 834aa    MW: 91178.2 Da    PI: 6.3709
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0827.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-18563357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Kaladp0008s0827.2.p  5 KYVRYTPEQVEALERVYAECPKPSSLKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                         5678*****************************************************97 PP
2START152.63.4e-481533602204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++ +Wv++  +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++  ++l  + ++  g
  Kaladp0008s0827.2.p 153 IAEETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCKGVAARACGLVSLEPM-KVAEILKDTPSWFRDCRTHDVLSILPTAngG 241
                          68999*****************************************************.8899999999***************99999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +l+l++++++a +++++ Rdf+ +R+i +l++g++v++++S++  +  p+   s ++vRae++pSg+li+p+++g+s +++v+h dl+  
  Kaladp0008s0827.2.p 242 TLELIYMQTYASTTMASgRDFWKLRFISSLEDGSLVVCERSLNASTGGPTgpsSLNFVRAEVFPSGFLIRPCEGGGSIIHIVDHLDLDPC 331
                          **********************************************999999999*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          + +++lr+l++s+ + ++k++va+lq+ +
  Kaladp0008s0827.2.p 332 SAPEILRPLYESSKIIAQKITVAALQHIR 360
                          **************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532164IPR001356Homeobox domain
SMARTSM003898.6E-16268IPR001356Homeobox domain
CDDcd000861.90E-16565No hitNo description
SuperFamilySSF466891.97E-16566IPR009057Homeodomain-like
PfamPF000463.6E-16663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-18763IPR009057Homeodomain-like
CDDcd146862.79E-65796No hitNo description
PROSITE profilePS5084823.819143344IPR002913START domain
Gene3DG3DSA:3.30.530.208.0E-17151329IPR023393START-like domain
SMARTSM002342.6E-38152362IPR002913START domain
SuperFamilySSF559614.4E-30153364No hitNo description
PfamPF018525.5E-46153360IPR002913START domain
PfamPF086701.4E-45688832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MDSGKYVRYT PEQVEALERV YAECPKPSSL KRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKESSRL QTVNKKLTAL NRLLMEENER LQKQVSHLSY DNGFMRQKLR SVSATTNTSC  120
ESVVMSGPPH SQQNPTHQHP ERDANSPAGL LAIAEETLAE FLSKATGTAV NWVQMIGMKP  180
GPDSIGIVAV SRNCKGVAAR ACGLVSLEPM KVAEILKDTP SWFRDCRTHD VLSILPTANG  240
GTLELIYMQT YASTTMASGR DFWKLRFISS LEDGSLVVCE RSLNASTGGP TGPSSLNFVR  300
AEVFPSGFLI RPCEGGGSII HIVDHLDLDP CSAPEILRPL YESSKIIAQK ITVAALQHIR  360
QIAQENCGEI KYGGGKQPAV LRTFSQRLSR GFNDAVNGFA DDGWSLLDSV GMDDVTISIN  420
MSASKFLGSQ SNSAALFPAF GGGVLCAKAS MLLEDVPPAV LVRFLREHRS EWADYGIDAY  480
SATALRASPF AIPCSKLNTL PSNQVILPLA HTIELEEFLE VVRLEGQAFC PEDIAFARDM  540
FLLQLCSGID ENEAGPCAQI VFAPIDESFA DDALLLPSGF RVISLENKAD EPGATRTLDL  600
ASALEVHTTG AQAAGGSGAN HFKHRAVLTM AFQFTFENHL RDSVASMARQ YVRSVVGAVQ  660
RVAMALSPAR LGSQMVVKSF PGSTEAITLA RWIAQSYKIH TGEELVRVYS QAGDSVLKLL  720
WQISDAVMCC SLTTNASPVF TFANQSGLDM LETTLGSLQD IKLEKTLNEA GHKSLLAEFP  780
KITQQGLAYL PAGNCMSSMG RPISYDQAIA WKVLDDEEVN HCLAFMFVNW SFM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281868.20.0PREDICTED: homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A061G7E30.0A0A061G7E3_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 5
STRINGEOY254960.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]