PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0912.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 285aa MW: 30952.8 Da PI: 7.1348

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0912.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00099	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F + L H+r+H Kaladp0008s0912.1.p 173 HECAICGAEFASGQALGGHMRRH 195 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	5.7E-12	106	131	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.53E-7	106	129	No hit	No description
PROSITE profile	PS50157	10.575	107	134	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	107	129	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.53E-7	168	195	No hit	No description
Pfam	PF13912	1.3E-11	172	196	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.093	173	195	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.473	173	200	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	175	195	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDHQQGNNSI LKRKRSKLQR PFVGGMADGR PNVVVTPTTT FSSLSSEDQM PLATEEEEEE 60 DREVAKCLIL LAQAHNPPRI GSLEMMSSRK WWSLEDKKQV NRGGGVYECK TCNRSFHSFQ 120 ALGGHRTSHK KPRITTHDET PLVSKSPHMG VNVPVPTIAA LQLGSRAAKT RVHECAICGA 180 EFASGQALGG HMRRHRVTNS PQETSTTETK AAAADGVRIT LSLLAPPAPE EASSRSDHNE 240 LLSLDLNLPA ASSSEEDETR SFLPEKLQDS GLGLSTPALV DCHY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	17	LKRKRSKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	6e-40	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0008s0912.1.p