PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0010s0049.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 740aa    MW: 80391.2 Da    PI: 7.5398
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0010s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.3e-24173274199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++       ++ + s++l+ +d++gr+W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +
  Kaladp0010s0049.1.p 173 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyTLQRP-SQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFLR 261
                          99****************************9955544.569************************************************4 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                              ++ l+++v+r+
  Kaladp0010s0049.1.p 262 G--GDGILRLGVRRA 274
                          3..677778888875 PP
2Auxin_resp102.55.5e-34299380182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +++a+st+svF++ YnPr ++s+F+++ +k+ ++l +k+s G+R+km  eted++err++G v+gvsdldp+ Wp+SkW++L
  Kaladp0010s0049.1.p 299 VINAISTRSVFNISYNPRGTSSDFIIPHSKFTRSLVHKFSCGTRLKMCCETEDAAERRFTGAVTGVSDLDPIGWPGSKWKCL 380
                          5799*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-40169282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-39169276IPR015300DNA-binding pseudobarrel domain
CDDcd100179.01E-23171273No hitNo description
SMARTSM010191.0E-23173275IPR003340B3 DNA binding domain
PROSITE profilePS5086313.563173275IPR003340B3 DNA binding domain
PfamPF023629.9E-22173274IPR003340B3 DNA binding domain
PfamPF065072.7E-28300380IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MICAVEGLSE ILAMAATGRG LNLFDLNTAE EEDAAAGGSL SPSPSPSPTS TCSGVVPGST  60
GCVAPSVCLE LWHACVGPLV SLPKKNSLVV YFPQGQLECF GESPAVICGV PPHVFCRVLD  120
VKLHAEVDSD EVCAQVFLIP VAQEQLPQVD KTEVDGEDDD INCGSKSMTR HMFCKTLTAS  180
DTSTHGGFSV PRRAAEDCFP PLDYTLQRPS QELVAKDLHG REWKFRHIYR GQPRRHLLTT  240
GWSAFVNRKK LVSGDAVLFL RGGDGILRLG VRRAAQLKEK PPFPPIFREQ QSHGSFSAVI  300
NAISTRSVFN ISYNPRGTSS DFIIPHSKFT RSLVHKFSCG TRLKMCCETE DAAERRFTGA  360
VTGVSDLDPI GWPGSKWKCL LVEWDDSENN LHGGRVSPWE VEPAGFVVGC CMPAPSGSKR  420
GRNGLPSTIH NSPIPDGKGL PDFRESLRFQ KVLQGQEIMS LKPQNTQNHN LAESLSCYPG  480
TDSSRIGALG NKISRPYFGN PDFSFNNKGF GESQWFQRVL QGQEKTSNMP YGMISCTSSH  540
DELLGIFNGI ALPNFRQTAL LHDSNSQFHA AKSSVPVSSP SSVLMFPQAT SLVPNPCRVP  600
GLLEGRGIGN QGQVSPTRPY VGELPSSYIK DNFVRFESCI PRTQFNQQDL CGHGPRPALS  660
GSQKLVPSCK NSCRLFGISL TDKEHAPNVA DETILKANQL NTGPAFRITE RQFLAQHPTM  720
ALGCLQKLDS ASDAITYGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1006140313354Auxin response factor 1
4ldw_A1e-1006140313354Auxin response factor 1
4ldw_B1e-1006140313354Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655464.10.0PREDICTED: auxin response factor 3
RefseqXP_019078171.10.0PREDICTED: auxin response factor 3
TrEMBLA0A2N9G8C10.0A0A2N9G8C1_FAGSY; Auxin response factor
STRINGVIT_10s0003g00420.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-172ARF family protein