PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0042.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 193aa    MW: 21818.5 Da    PI: 7.3083
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.82e-1962152190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHe 88 
                          +f+ e++ ++GF+ ++ +s++s+++g   ++ fvC+kegkr+ e++    ++r+raetrt+C+ kl +++e    gk++v+ l+leHnH 
  Kaladp0011s0042.1.p  62 EFWTEFGARTGFTPCRFYSHTSRKDGLPSSAVFVCNKEGKRNVESEL-IMKKRERAETRTSCQVKLGIHREPttFGKYRVYLLHLEHNHV 150
                          69*****************************************9999.99999*****************99889**************9 PP

                 FAR1  89 la 90 
                          l 
  Kaladp0011s0042.1.p 151 LH 152
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-1562152IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MCDTGNDQAR PVALESVSQS VDTSDCEITL QRHGSFSFGA ETEMGHIPKL GMDFDSVKDA  60
WEFWTEFGAR TGFTPCRFYS HTSRKDGLPS SAVFVCNKEG KRNVESELIM KKRERAETRT  120
SCQVKLGIHR EPTTFGKYRV YLLHLEHNHV LHTRATVQMM SSQPHITRIQ ANEIELADTS  180
DIQIKRSHSL NT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-12FAR1-related sequence 12