PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0163.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 412aa    MW: 45988.2 Da    PI: 6.5607
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0163.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox222.7e-073483802254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  Kaladp0011s0163.1.p 348 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 380
                          69*****************************87 PP
2ELK29.31.9e-10301322122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+ +++++++E++
  Kaladp0011s0163.1.p 301 ELKHELKQGYKDKIVDIREEIL 322
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-19136180IPR005540KNOX1
PfamPF037902.5E-17138179IPR005540KNOX1
SMARTSM012562.6E-26189244IPR005541KNOX2
PfamPF037918.7E-19194243IPR005541KNOX2
PROSITE profilePS512139.969301321IPR005539ELK domain
PfamPF037891.4E-5301322IPR005539ELK domain
SMARTSM011885.1E-4301322IPR005539ELK domain
PROSITE profilePS5007111.483321384IPR001356Homeobox domain
SuperFamilySSF466893.04E-15323386IPR009057Homeodomain-like
SMARTSM003892.7E-9323388IPR001356Homeobox domain
CDDcd000861.31E-10324385No hitNo description
Gene3DG3DSA:1.10.10.606.0E-24328386IPR009057Homeodomain-like
PfamPF059202.3E-17341380IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAYQSSRNHM LSEMDQLQQF SERQMSENGS VVHNHPHAVV SGGGGPTWLS TAVIQQHSHH  60
QYAAAADNNN NNFQLHLQTN SDSSNSPATT RTNRWMSPEA KIGIGGGSGG GGSFRKEEEM  120
AMIVNEYGGV INWEKARFKA EILSHPLYEQ LLAAHVSCLR IATPVDQLPQ IDAQLAQSHN  180
LVAKYADAVQ GSCVDDKELD QFMTQYVLLL NSFKEQLQQH VRVHAMEAVM ACWELEQALQ  240
NLTGVSPGEG TGATMSDDED DRAEGELNMF EGGMDCSDSM GLGPLVPTDS ERSLMERVRQ  300
ELKHELKQGY KDKIVDIREE ILRKRRAGKL PGDTTSHLKA WWRTHSKWPY PTEEDKARLV  360
QETGLQLKQI NNWFINQRKR NWHSNSSTAT ASKSKRKSNA GTTSSNNEAF R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2727870.0EU272787.1 Kalanchoe x houghtonii class 1 knox protein (KN1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215036.11e-170PREDICTED: homeobox protein knotted-1-like LET12 isoform X1
RefseqXP_027903510.11e-170homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-165KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB1P3790.0B1P379_9MAGN; Class 1 knox protein
STRINGGSMUA_Achr7P05170_0011e-168(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-157KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]