PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0227.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 344aa    MW: 37959.3 Da    PI: 7.3805
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0227.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.33.2e-0869114342
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 
                           + C+ +e  ++   C+ +   lC+ C + +H +       H++vp+
  Kaladp0011s0227.1.p  69 VPACDVCEGAPAAVTCKADAASLCAVCDQDIH-SvnplarrHERVPI 114
                          688*****************************.44888888999987 PP
2CCT68.32e-23288330143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+
  Kaladp0011s0227.1.p 288 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 330
                          9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.112663IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0252671IPR000315B-box-type zinc finger
CDDcd000212.35E-53070No hitNo description
PROSITE profilePS5011910.4867114IPR000315B-box-type zinc finger
SMARTSM003363.1E-1567114IPR000315B-box-type zinc finger
PfamPF006432.3E-669114IPR000315B-box-type zinc finger
CDDcd000218.03E-870114No hitNo description
PfamPF062031.7E-17288330IPR010402CCT domain
PROSITE profilePS5101716.638288330IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRMAEEEEES YVHGVPVSWP IVPPRAASKL CHSCNSAAAK LFCRRHSAFF CLNCDAKIHL  60
FTSASHHRVP ACDVCEGAPA AVTCKADAAS LCAVCDQDIH SVNPLARRHE RVPIAPLQVH  120
HPAPNKSAPP APIVICGFDV SDFLVPMAEE EILWMNLNQN SKLALCPSEV KSEDVIFPDF  180
DPLDDVDLPD PVSYGDFKHE TIISYSDSVV PTDHCYISTS SPIANFETLI PKLLLMHVQP  240
PAKSTHSPIH LTVVSDHHSS LTTSVGGGGD FAKNVPVPAT RQISATEREA RVLRYKEKRK  300
NRKFEKTIRY ASRKAYAETR PRIKGRFAKR RGDSDVFSDL LTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-62CONSTANS-like 3