PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0356.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 325aa    MW: 36337.1 Da    PI: 10.8445
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0356.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix561.1e-1773162186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +Wt++ +++Li+a   +  +l+rg+l++++W+ev++++     ++++ +r+ +qCk++++ l+k+yk +k +++  +s + s +p+f++l
  Kaladp0011s0356.1.p  73 CWTEEATRTLIDAWGTRYLDLNRGNLRQKHWQEVADAVnarhgAAKKTRRTDVQCKNRIDTLKKKYKIEKSRASAAASYA-SPWPFFHRL 161
                          8**************************************99999999***************************986555.59******9 PP

             trihelix  86 e 86 
                          +
  Kaladp0011s0356.1.p 162 D 162
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-2771164No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTSSAFPHVF PATPQNLNLS RKLSRRPKHD RRQQKSSLKD TPMDDPPPPP QQHTLALVPH  60
RAPHGPVPFR EDCWTEEATR TLIDAWGTRY LDLNRGNLRQ KHWQEVADAV NARHGAAKKT  120
RRTDVQCKNR IDTLKKKYKI EKSRASAAAS YASPWPFFHR LDSLIGPIPS NKSSLSSLPA  180
HRRSGFSAPV PVAPRSASVK RPAFDDSSFR RNFFSTFAAA AAAATAEDSD ATRKSRSSSA  240
GRLGGAVGDT GGCKELAQAI ATFGEIYERV EGSKQRQVIE LEMKRMQFAK ELEIQRMEML  300
VDMQLQFEKS KRQKRQSNGA DNYL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881243.12e-93trihelix transcription factor ASIL2
TrEMBLA0A1U8B7L01e-90A0A1U8B7L0_NELNU; trihelix transcription factor ASIL2
STRINGXP_010277022.12e-91(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-45sequence-specific DNA binding transcription factors