PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0407.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 138aa    MW: 15729.9 Da    PI: 10.1109
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0407.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.2e-125396447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         W +eE+  ++++ ++lG g+Wk I++++ ++R++ q+ s+ qky
  Kaladp0011s0407.1.p 53 WNEEEHASILHGLQELGRGDWKNISKKFVTTRSPSQIASHAQKY 96
                         *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.101.6E-4625IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.993720IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129413.2245101IPR017930Myb domain
SuperFamilySSF466894.09E-134699IPR009057Homeodomain-like
SMARTSM007171.2E-84999IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.0E-134999IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-105096IPR009057Homeodomain-like
PfamPF002492.8E-105396IPR001005SANT/Myb domain
CDDcd001671.59E-75397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MKVDRECSNC GEKGHNTRTC IAEKKGMFKL FGVKIIHSNE NIKTSYQRKG VLWNEEEHAS  60
ILHGLQELGR GDWKNISKKF VTTRSPSQIA SHAQKYFGRR NGRATDKLRK SIFDQEVEHP  120
DQLGEAYTKT LMTSFIT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278155.29e-32PREDICTED: transcription factor MYB1R1 isoform X1
RefseqXP_019081570.13e-32PREDICTED: transcription factor MYB1R1 isoform X2
SwissprotQ9FKF94e-25M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A438INP86e-31A0A438INP8_VITVI; Putative transcription factor
STRINGXP_002511019.19e-28(Ricinus communis)
STRINGSolyc08g065380.2.14e-28(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-27MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]