PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0429.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 236aa    MW: 26673 Da    PI: 9.8574
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0429.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-153481148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd +l++ ++  G + W++Ia+  g++R++k+c++rw +yl
  Kaladp0011s0429.1.p 34 KGAWRPEEDHILAETIAIRGAKKWSKIAALAGLNRCGKSCRLRWMNYL 81
                         79********************************************97 PP
2Myb_DNA-binding49.21.2e-1587132148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg  +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Kaladp0011s0429.1.p  87 RGDISAQEEDLILRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNSHL 132
                          677799****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3692981IPR017930Myb domain
SMARTSM007172.5E-93383IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-2733128IPR009057Homeodomain-like
PfamPF002492.7E-143481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-223588IPR009057Homeodomain-like
CDDcd001674.39E-73681No hitNo description
PROSITE profilePS5129424.34382136IPR017930Myb domain
SMARTSM007172.8E-1586134IPR001005SANT/Myb domain
PfamPF002492.7E-1487132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2489136IPR009057Homeodomain-like
CDDcd001671.31E-1091132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGQVDDNKES NSSKKDEATI AKKATKPKQR AMSKGAWRPE EDHILAETIA IRGAKKWSKI  60
AALAGLNRCG KSCRLRWMNY LRPNIKRGDI SAQEEDLILR LHKLLGNRWA LIAGRLPGRT  120
DNEIKNYWNS HLSKRMRDAN GQDPERRSRS TNVKNYEDSQ GPSSSIARSN VKVNHHTNPS  180
IIAQEADQPH TKLLIENNKN EMMANSFGAS EFEFLSEGFF ELDWISSFLE FDGCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26321365108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228203.12e-67PREDICTED: transcription factor MYB114-like
RefseqXP_020416417.12e-67transcription factor MYB114 isoform X2
RefseqXP_021800600.12e-67transcription factor WER-like
SwissprotQ9FJA21e-49TT2_ARATH; Transcription factor TT2
TrEMBLA0A314UT624e-67A0A314UT62_PRUYE; Transcription factor MYB114-like
STRINGXP_008228203.16e-67(Prunus mume)
STRINGEMJ176646e-67(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-51MYB family protein
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]