PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s0457.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 207aa MW: 22816.2 Da PI: 7.8085

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s0457.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.2e-38	12	70	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprCds+ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+PvGg++rk k+ Kaladp0011s0457.1.p 12 HEILKCPRCDSSNTKFCYYNNYNLSQPRHYCKNCKRYWTKGGTLRNIPVGGASRKITKR 70 6789**************************************************97664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-24	8	62	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.8E-33	14	68	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.239	15	69	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	17	53	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MQDPYFNQFP EHEILKCPRC DSSNTKFCYY NNYNLSQPRH YCKNCKRYWT KGGTLRNIPV 60 GGASRKITKR PSSTTTTTTT SSPSNPKRQT TATTTLATTE HPVTGTSSAP TALTSQHHHH 120 HQQQFAGSSA DYLMDGLYPR MGVRGFEQMG LDGDQREVRL ADPKAESDLE MRFGGLEGGD 180 MNCWSGSSDD CPDLAIYTTP GGSGFQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267036.1	4e-46	PREDICTED: dof zinc finger protein DOF3.1-like
Swissprot	O82155	3e-35	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A1U8ALW5	1e-44	A0A1U8ALW5_NELNU; dof zinc finger protein DOF3.1-like
STRING	XP_010267036.1	2e-45	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	9e-33	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Kaladp0011s0457.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]